PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028055239.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 314aa    MW: 34715.5 Da    PI: 6.9095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028055239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l++++++ G+g +W t +++ g++R++k+c++rw++yl
   XP_028055239.1 14 RGPWSPEEDAKLKEYIEKNGTGgNWITLPQKAGLRRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding35.22.8e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_028055239.1  69 GEFSDVEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      7899*****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MGRAPCCDKA SVKRGPWSPE EDAKLKEYIE KNGTGGNWIT LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDVEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLVGM  120
LSSSHTSSLA SKCSNNNNNA YYTSTNQTNS FIGYELPNIS TPSSNLLSTT TACSSAQEGY  180
VGPMHTVLMF GGGGDQASCS NSSDGSYNNQ ISHGREMEHD YYGEHMGFHL QSYAYNGVDH  240
ENQNLMISSS GGGDGNGFSV KPNGFLCGET PLIDYYSSLE EIKQLITTNN ICSNNNNLNF  300
FADENKTDEK VLYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-74MYB family protein