PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc037344.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26574.4 Da    PI: 9.2054
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc037344.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++s t+kl+ey+s
  Cse_sc037344.1_g010.1  9 KKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYIS 59
                           68***********************************************86 PP
2K-box76.28.8e-2671169199
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                            yqk+sg +l+++++e++q+el++Lk+ +++L++ +R++lG++L+ L ++eL  Le++ ++++  iR++K +++ +++e+++kk +++q
  Cse_sc037344.1_g010.1  71 YQKASGIDLWNSHYEKMQEELRQLKDVNKKLRTHIRQRLGDCLDHLGFEELLDLEKESQEAVYVIRERKLKVIGNKLETSKKKVRSAQ 158
                            899************************************************************************************* PP

                  K-box  89 eenkaLrkkle 99 
                            +  k+L ++++
  Cse_sc037344.1_g010.1 159 DVYKKLMHEFD 169
                            ******99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MARGKIQIKK IENSTNRQVT YSKRRNGLFK KASELTVLCD AKVSIIMVSC TDKLHEYISP  60
SITTKQFFDQ YQKASGIDLW NSHYEKMQEE LRQLKDVNKK LRTHIRQRLG DCLDHLGFEE  120
LLDLEKESQE AVYVIRERKL KVIGNKLETS KKKVRSAQDV YKKLMHEFDI RGEDPQFGMI  180
EDAGEYETIY GYPPHIATQR ILTLRLQPNH PDNLHAATAS DLTTYSLLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-92MIKC_MADS family protein