PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc027006.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 273aa    MW: 30772.2 Da    PI: 9.5272
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc027006.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.8e-274393151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien s rqvtfskRr+g++KKA+EL +LCdae+ viifsstgklye++s
  Cse_sc027006.1_g010.1 43 KKIENVSSRQVTFSKRRTGLMKKAKELAILCDAEIGVIIFSSTGKLYEFAS 93
                           68***********************************************86 PP
2K-box67.45e-231201991796
                  K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                             + e++ Lk+ei +Lq+ qR ++G++Le L++keL +Le+qL++++  i+++K+  lle+ie+++ +e+++ +en+aL+k
  Cse_sc027006.1_g010.1 120 VDPEVEALKAEIAKLQKGQRLMMGKELEGLNYKELDNLERQLHDGMLAIKNRKDMALLEEIEQTKLREQRTMRENEALKK 199
                            66799*************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MPTKVSIMCH SSSSSSSGEA DGVVGGGEEA RKKTMGRGRI EIKKIENVSS RQVTFSKRRT  60
GLMKKAKELA ILCDAEIGVI IFSSTGKLYE FASSRLQNII SRYERNSNTS YNPIPGALEV  120
DPEVEALKAE IAKLQKGQRL MMGKELEGLN YKELDNLERQ LHDGMLAIKN RKDMALLEEI  180
EQTKLREQRT MRENEALKKH KYKDYLLQIT EQLNKSTTNH EIHLIGRKSP YISPSSLTYL  240
SPDNGDAGIS LHLGLSSHDD PHKRKIPKLE YDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-49MIKC_MADS family protein