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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc016675.1_g050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 261aa MW: 29423 Da PI: 5.2963 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.5 | 8.5e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien s rqvtfskRr+g+lKKA+ELSvLCdaev +i+fs+tg+lye++s Cse_sc016675.1_g050.1 9 KKIENVSTRQVTFSKRRAGLLKKAHELSVLCDAEVGIIVFSNTGRLYEFCS 59 68***********************************************96 PP | |||||||
2 | K-box | 60.7 | 5.7e-21 | 81 | 169 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ + q el+ L++e+ L++e+ +l G +L+ s++eL+qLeqqL+++l ++++kK+ +l+e+i+++ +ke+el en+ Lr ++ Cse_sc016675.1_g050.1 81 QVEMRQEQAELEHLRNEVARLRNENARLTGSNLNGASVQELHQLEQQLNDGLISVKEKKDAMLFEEIDRSNHKERELGFENNVLRGEI 168 45678899****************************************************************************9988 PP K-box 99 e 99 e Cse_sc016675.1_g050.1 169 E 169 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MGRGKIEIKK IENVSTRQVT FSKRRAGLLK KAHELSVLCD AEVGIIVFSN TGRLYEFCST 60 SMRGIIDRYN VATEPSTSQL QVEMRQEQAE LEHLRNEVAR LRNENARLTG SNLNGASVQE 120 LHQLEQQLND GLISVKEKKD AMLFEEIDRS NHKERELGFE NNVLRGEIER LKRFIPQTEQ 180 PTQPGYLEYN PVADVPSSSA GLLKQDRLSP DTVCYYGSDN TDSETALQLR LPCGDSARTK 240 EAAMPKREVS SSSCGNEEME Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 6e-54 | MIKC_MADS family protein |