PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008037.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 300aa    MW: 34536.2 Da    PI: 6.9585
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008037.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.28.1e-27955147
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                           k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+  
  Cse_sc008037.1_g040.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRAS 55
                           68*****************************************9865 PP
2K-box15.76.2e-07108172870
                  K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                            s  ++++  e  qqe+ + k+ + ++++ +R + G+  e  +l e +  eq Le+ lk++R +K+
  Cse_sc008037.1_g040.1 108 SrlNADSRIEDIQQEIMRCKSHMLEMEKRLRVFEGDPSEITTLCEVEYREQILEQTLKHVRVRKH 172
                            135889999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRASIFSGS  60
RSIEEIMARY INLPEHERGR LQNQEFLERA LGRMKTEAQD HHSQNHASRL NADSRIEDIQ  120
QEIMRCKSHM LEMEKRLRVF EGDPSEITTL CEVEYREQIL EQTLKHVRVR KHVLEKFNSA  180
DAESSSQVPL PSEAINLNNM VTANQSNIYD WLPPRDPQVP VMNFMNFNGL LPQRQNEQVN  240
RPSVMEAESS VNVQRTEFGQ MIDMNLSPWT QFYPAGNGPM LMAHPGERAF SDGYLPQFSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.16e-52MIKC_MADS family protein