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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc003765.1_g080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23445.4 Da PI: 4.884 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.5 | 1.1e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kri++k rqvtfskRr+g++KKA LSvLCd+++av++fss+gklye Cse_sc003765.1_g080.1 9 KRIDDKNSRQVTFSKRRTGLMKKARQLSVLCDVDIAVVVFSSQGKLYES 57 79*********************************************95 PP | |||||||
2 | K-box | 42.4 | 3.1e-15 | 98 | 173 | 23 | 99 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + + +e Lq+ +l+ e+ e+Ls++++ qLeq+L+ +l + R +K++l++e +++lq+kek+l+e++++L+k+++ Cse_sc003765.1_g080.1 98 RFRTCNELLQTV-DRLVEENNEQLSVNDMTQLEQELDAALMQTRLRKTQLMMEYVSTLQEKEKMLSEDKEELQKQVA 173 667778888887.668889999****************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MGRRKLEIKR IDDKNSRQVT FSKRRTGLMK KARQLSVLCD VDIAVVVFSS QGKLYESSSG 60 GSSVESILSR YEKSCAETGE GSNRGACTDL EFLLQSTRFR TCNELLQTVD RLVEENNEQL 120 SVNDMTQLEQ ELDAALMQTR LRKTQLMMEY VSTLQEKEKM LSEDKEELQK QVAAAKQNDG 180 DDGGGGLNNL ANNYENSLQP LVTLSLFNG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65070.1 | 3e-38 | MIKC_MADS family protein |