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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc003129.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 142aa MW: 16795.9 Da PI: 10.2276 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.2 | 5.6e-15 | 2 | 38 | 15 | 51 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kR+ngi+KKA+ + vLCd++v+ +i+ s+ k+yey+s Cse_sc003129.1_g020.1 2 KRKNGIIKKAKDIIVLCDVNVSFVIYVSSSKMYEYCS 38 9**********************************96 PP | |||||||
2 | K-box | 67.9 | 3.4e-23 | 50 | 123 | 1 | 74 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 yq+ g++l++ak+e+l++e++++kke+ ++q e+Rhl+G+ ++sL+++ L e++Le++l++iR+kK+++l+ Cse_sc003129.1_g020.1 50 YQRIYGNKLWDAKHENLKNEIDRIKKENVSMQIELRHLKGKYIKSLNYEKLIAYEDALENGLTNIREKKDHILK 123 67778899***************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence |
MKRKNGIIKK AKDIIVLCDV NVSFVIYVSS SKMYEYCSPK TNLIDMLDRY QRIYGNKLWD 60 AKHENLKNEI DRIKKENVSM QIELRHLKGK YIKSLNYEKL IAYEDALENG LTNIREKKDH 120 ILKIKVFKIG ILPRIVFVFA RS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-49 | MIKC_MADS family protein |