PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000306.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 333aa    MW: 38732.9 Da    PI: 9.905
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000306.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.5e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgkl+ey+s
  Cse_sc000306.1_g020.1  9 KKIENNTNRQVTYSKRRNGIFKKANELTVLCDAKVSLIMFSNTGKLHEYIS 59
                           68***********************************************86 PP
2K-box75.61.4e-2571164193
                  K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                            yq++ g +l+ +++e++++ + kLk+ +++L+re+R++ lGed++ L++++L  Leqq+++sl+ +R++K++++++q+++ +k+ k+l
  Cse_sc000306.1_g020.1  71 YQTTVGFDLWGSHYERMKETMYKLKDTNNKLRREIRQRvLGEDIDGLDMNDLTVLEQQMQDSLTVVRERKYHVIKTQTDTCRKRVKNL 158
                            66777778****************************8538************************************************ PP

                  K-box  88 qeenka 93 
                            +++n +
  Cse_sc000306.1_g020.1 159 EQRNGN 164
                            **9965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MGRGKIEIKK IENNTNRQVT YSKRRNGIFK KANELTVLCD AKVSLIMFSN TGKLHEYISP  60
STTTKKMYDM YQTTVGFDLW GSHYERMKET MYKLKDTNNK LRREIRQRVL GEDIDGLDMN  120
DLTVLEQQMQ DSLTVVRERK YHVIKTQTDT CRKRVKNLEQ RNGNRFNQEK EVVDSTNVKD  180
PKKEVVDSAI VKDPERPIDS GNQSREEEKP CAYRLIKKKD RDRLIQGINQ EKSRPLEMRQ  240
REPKEEKKTY QLSYNATGRK KGDLLLSFNT AIWKKKDDTI HQAEKKYGMH ENEGGYESTI  300
AYSNGVSNLY GFCALPNNIT HGSGYEPQGP RLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-61MIKC_MADS family protein