PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041410-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CAMTA

Protein Properties

Length: 932aa MW: 105392 Da PI: 7.3999

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041410-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.4	1.9e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +ke k+rwl+++ei+aiL n++ ++++ ++ + p+ g+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+np+f AUR62041410-RA 29 MKEaKSRWLRPNEIHAILFNYAYFTIHVKPVNLPRGGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGTEEKIHVYYAHGEDNPNFV 123 45559**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ AUR62041410-RA 124 RRCYWLLDKSLEHIVLVHYRETQ 146 ******************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 932 aa Download sequence
MESGFNGGLA GFDIHGFRTM EDLDIPNIMK EAKSRWLRPN EIHAILFNYA YFTIHVKPVN 60 LPRGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEEKIH VYYAHGEDNP 120 NFVRRCYWLL DKSLEHIVLV HYRETQELQV SPITPTNSSF RSDLSDYSAS PLMSRGNDCM 180 VDQVNYPAMK ACTDLGDGIN VNHHEMRLHE INTLDWDELL LLSDPTEATL TTKEQTPYLH 240 QDNQPAAFTS ENNGSILSTG NPHLDMLTSG NSMNPVAGTS PAQFSNVGDM YLSLMGVQKD 300 PKVEGKIYDM GTVGAGNLSN KMAKDGLQSQ DSFGRWMNEI IVDSPESVDD PSFESSGATS 360 HGSLVSSGAV NHEGPVPAQI FCITDISPTW TFSTEGAKIL VVGFFHQEYR HLAKSIVYCV 420 CGDTCVPAEI IQVGVFRCMV SPQSPGSVNF YLSIDCSTPI SQVLTFEFRP PAITNQAVRE 480 DNSQWDMFRI QMRLAFLLFT TSRSLDILSS LVSQSALKEG KNFALKYSNV ADSWAYFAKL 540 IQSGKITLER AKDNLFELSI KSRLKEWLLE RVVDGSKISE RDDEGQGVLH LCAILGYTWA 600 IYLFSYSGLS LDFRDKFGWT ALHWAAYYGR ENMVAVLLSA GAKPNLVTDP TSDNPGGCTA 660 ADVAFKQGFE GLAAYLSEKA LIQQFEDMKV AGNVGGSLET HTYETANPSN ITEEDLYLKD 720 SLAAYRTAAD AAARIQVAFR ENALKQKTKT VEFLNPETEA QYIVAAMKIQ HAFRNYELRK 780 QMAAAARIQH RFRTWKFRRE FLNMRRKAIK IQAAYRGFQV RRQYRKFIWS VGILEKAILR 840 WRLRRKGLRG VKVEIEEPVD DQRRDSDTEE DFYRASRKQA EERVEKAVVR VQSMFRSKQA 900 QQEYRRMKLA HTQAQLHFED SGNPNGYMTD I*

Sequence ? help Back to Top

Protein Sequence Length: 932 aa Download sequence

MESGFNGGLA GFDIHGFRTM EDLDIPNIMK EAKSRWLRPN EIHAILFNYA YFTIHVKPVN  60
LPRGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEEKIH VYYAHGEDNP  120
NFVRRCYWLL DKSLEHIVLV HYRETQELQV SPITPTNSSF RSDLSDYSAS PLMSRGNDCM  180
VDQVNYPAMK ACTDLGDGIN VNHHEMRLHE INTLDWDELL LLSDPTEATL TTKEQTPYLH  240
QDNQPAAFTS ENNGSILSTG NPHLDMLTSG NSMNPVAGTS PAQFSNVGDM YLSLMGVQKD  300
PKVEGKIYDM GTVGAGNLSN KMAKDGLQSQ DSFGRWMNEI IVDSPESVDD PSFESSGATS  360
HGSLVSSGAV NHEGPVPAQI FCITDISPTW TFSTEGAKIL VVGFFHQEYR HLAKSIVYCV  420
CGDTCVPAEI IQVGVFRCMV SPQSPGSVNF YLSIDCSTPI SQVLTFEFRP PAITNQAVRE  480
DNSQWDMFRI QMRLAFLLFT TSRSLDILSS LVSQSALKEG KNFALKYSNV ADSWAYFAKL  540
IQSGKITLER AKDNLFELSI KSRLKEWLLE RVVDGSKISE RDDEGQGVLH LCAILGYTWA  600
IYLFSYSGLS LDFRDKFGWT ALHWAAYYGR ENMVAVLLSA GAKPNLVTDP TSDNPGGCTA  660
ADVAFKQGFE GLAAYLSEKA LIQQFEDMKV AGNVGGSLET HTYETANPSN ITEEDLYLKD  720
SLAAYRTAAD AAARIQVAFR ENALKQKTKT VEFLNPETEA QYIVAAMKIQ HAFRNYELRK  780
QMAAAARIQH RFRTWKFRRE FLNMRRKAIK IQAAYRGFQV RRQYRKFIWS VGILEKAILR  840
WRLRRKGLRG VKVEIEEPVD DQRRDSDTEE DFYRASRKQA EERVEKAVVR VQSMFRSKQA  900
QQEYRRMKLA HTQAQLHFED SGNPNGYMTD I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	88	RKKLRNFRKDGHNWKKK
2	72	89	RKKLRNFRKDGHNWKKKK
3	73	89	RKKLRNFRKDGHNWKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein