PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G16150.1
Common NameCMTA5, dl4115W, FCAALL.291, SR6
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CAMTA
Protein Properties Length: 923aa    MW: 104847 Da    PI: 7.3904
Description calmodulin binding;transcription regulators
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G16150.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1162.48.1e-51301463118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e  +rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+e++ptf rrcy
  AT4G16150.1  30 DEaYSRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGEDTPTFVRRCY 127
                  45589********************************************************************************************* PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  wlL++++e+ivlvhy+e++
  AT4G16150.1 128 WLLDKSQEHIVLVHYRETH 146
                  ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.89825151IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7328146IPR005559CG-1 DNA-binding domain
PfamPF038596.5E-4532144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.54E-13374460IPR014756Immunoglobulin E-set
CDDcd002045.31E-13560670No hitNo description
Gene3DG3DSA:1.25.40.203.9E-15561673IPR020683Ankyrin repeat-containing domain
PfamPF127966.8E-7561640IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.6E-15569682IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.761578643IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.808611643IPR002110Ankyrin repeat
SMARTSM002484.5E-6611640IPR002110Ankyrin repeat
PROSITE profilePS500966.614760786IPR000048IQ motif, EF-hand binding site
SMARTSM00015260775797IPR000048IQ motif, EF-hand binding site
SMARTSM000155.3E-4798820IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.761799823IPR000048IQ motif, EF-hand binding site
PfamPF006127.3E-4800820IPR000048IQ motif, EF-hand binding site
SMARTSM000156.8874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.37875904IPR000048IQ motif, EF-hand binding site
PfamPF006120.22876896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MAGVDSGKLI GSEIHGFHTL QDLDIQTMLD EAYSRWLRPN EIHALLCNHK FFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGEDTP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEVHA APATPGNSYS SSITDHLSPK IVAEDTSSGV  180
HNTCNTGFEV RSNSLGSRNH EIRLHEINTL DWDELLVPAD ISNQSHPTEE DMLYFTEQLQ  240
TAPRGSVKQG NHLAGYNGSV DIPSFPGLED PVYQNNNSCG AGEFSSQHSH CGVDPNLQRR  300
DFSATVTDQP GDALLNNGYG SQDSFGRWVN NFISDSPGSV DDPSLEAVYT PGQDSSTPPT  360
VFHSHSDIPE QVFNITDVSP AWAYSTEKTK ILVTGFFHDS FQHLGRSNLI CICGELRVPA  420
EFLQMGVYRC FLPPQSPGVV NLYLSVDGNK PISQLFSFEH RSVQFIEKAI PQDDQLYKWE  480
EFEFQVRLAH LLFTSSNKIS VLTSKISPEN LLEAKKLASR TSHLLNSWAY LMKSIQANEV  540
PFDQARDHLF ELTLKNRLKE WLLEKVIENR NTKEYDSKGL GVIHLCAVLG YTWSILLFSW  600
ANISLDFRDK QGWTALHWAA YYGREKMVAA LLSAGARPNL VTDPTKEFLG GCTAADLAQQ  660
KGYDGLAAFL AEKCLVAQFK DMQTAGNISG NLETIKAEKS SNPGNANEEE QSLKDTLAAY  720
RTAAEAAARI QGAFREHELK VRSSAVRFAS KEEEAKNIIA AMKIQHAFRN FEVRRKIAAA  780
ARIQYRFQTW KMRREFLNMR KKAIRIQAAF RGFQVRRQYQ KITWSVGVLE KAILRWRLKR  840
KGFRGLQVSQ PDEKEGSEAV EDFYKTSQKQ AEERLERSVV KVQAMFRSKK AQQDYRRMKL  900
AHEEAQLEYD GMQELDQMAT EES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.201700.0flower| inflorescence| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible245480_at1e-167
Expression AtlasAT4G16150-
AtGenExpressAT4G16150-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G16150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G75080
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G16150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1282950.0AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870178.10.0calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A178UWV10.0A0A178UWV1_ARATH; Uncharacterized protein
STRINGAT4G16150.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Representative plantOGRP73511116
Publications ? help Back to Top
  1. Reddy VS,Ali GS,Reddy AS
    Genes encoding calmodulin-binding proteins in the Arabidopsis genome.
    J. Biol. Chem., 2002. 277(12): p. 9840-52
    [PMID:11782485]
  2. Bouch
    A novel family of calmodulin-binding transcription activators in multicellular organisms.
    J. Biol. Chem., 2002. 277(24): p. 21851-61
    [PMID:11925432]
  3. Menges M,Hennig L,Gruissem W,Murray JA
    Cell cycle-regulated gene expression in Arabidopsis.
    J. Biol. Chem., 2002. 277(44): p. 41987-2002
    [PMID:12169696]
  4. Yang T,Poovaiah BW
    A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants.
    J. Biol. Chem., 2002. 277(47): p. 45049-58
    [PMID:12218065]
  5. Mitsuda N,Isono T,Sato MH
    Arabidopsis CAMTA family proteins enhance V-PPase expression in pollen.
    Plant Cell Physiol., 2003. 44(10): p. 975-81
    [PMID:14581622]
  6. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  7. Choi MS, et al.
    Isolation of a calmodulin-binding transcription factor from rice (Oryza sativa L.).
    J. Biol. Chem., 2005. 280(49): p. 40820-31
    [PMID:16192280]
  8. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  9. Wang C, et al.
    Identification of BZR1-interacting proteins as potential components of the brassinosteroid signaling pathway in Arabidopsis through tandem affinity purification.
    Mol. Cell Proteomics, 2013. 12(12): p. 3653-65
    [PMID:24019147]
  10. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  11. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]