PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039621-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

NF-YC

Protein Properties

Length: 238aa MW: 26813.3 Da PI: 10.3098

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039621-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	29.8	1.2e-09	128	219	10	99
NF-YC 10 iekatdfknhelPlarikkilkad..edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e++++ + +P+ ri +i+k++ ++is ea l+ ka e fi ++ ++ a e +++ + +a++v + + dfl d vp++ AUR62039621-RA 128 EEEKEENSECVFPMNRIVRIVKSEgvSSDSKISGEAVFLINKAAEKFIELFSKDAYDFAVEDRKSFVGYKHLASVVCKEKRLDFLSDFVPEK 219 45556666788*********983335579*************999999*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MSSGKRFEKT FSRKKKETNN NNNGGKTEDE EELLISQLKS SSQQQNGKPK NSNGTKSAIV 60 VNKKKTFPTT TQNNNKKKKE EKKVKIENDG KDQTQKQKRN AENGVEDVKK EKKPKTATMA 120 KNQRKGKEEE KEENSECVFP MNRIVRIVKS EGVSSDSKIS GEAVFLINKA AEKFIELFSK 180 DAYDFAVEDR KSFVGYKHLA SVVCKEKRLD FLSDFVPEKI TAEKAQAERK PAETLPG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	63	79	KKKTFPTTTQNNNKKKK
2	76	115	KKKKEEKKVKIENDGKDQTQKQKRNAENGVEDVKKEKKPK
3	112	125	KKPKTATMAKNQRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	5e-28	NF-YC family protein