PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62034559-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22552.8 Da PI: 8.4554 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.4 | 6.7e-27 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien++nrqvt+skRrng++KKA EL vLCda v++i++ss++kl+e AUR62034559-RA 9 KKIENQTNRQVTYSKRRNGLFKKATELAVLCDASVSIIMISSSNKLHE 56 68*********************************************8 PP | |||||||
2 | K-box | 62.7 | 1.4e-21 | 71 | 140 | 1 | 70 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 yq+ + ++l++++++++q++l+ L++ ++ Lq+ +R+++G++Le+L+++eL+ Le+++ +++k iR++K+ AUR62034559-RA 71 YQRVKEVDLWAKQYQKMQKDLQELNEINRGLQKDIRRRMGDCLEDLDINELRCLEDEMVNAVKVIRERKD 140 55566677************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KATELAVLCD ASVSIIMISS SNKLHEQHSP 60 GITPKEVYDK YQRVKEVDLW AKQYQKMQKD LQELNEINRG LQKDIRRRMG DCLEDLDINE 120 LRCLEDEMVN AVKVIRERKD IPKEESQYGL VDNGEYNHVL GYNDDSRILA LRLQPCQPNL 180 HAGAGSGSCV TTYTLL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-72 | MIKC_MADS family protein |