PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62029052-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 532aa MW: 59846.5 Da PI: 9.0347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62029052-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.4e-13	347	391	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR++iN++f+ Lr+llP+ +K +Ka++L+ + eY++sL AUR62029052-RA 347 HMISERKRREKINESFQALRSLLPPG-----TKKDKASVLRTTKEYLSSL 391 8899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MDSVFQLGNG DRVSYLCSLM QSFGASYICL WTYSPDLKFL YCEDGHFQEE ASSSTGGVSS 60 ISLRLFNEYK HSVFPVGNDL VPGLAFRDKI LSLKLQEIDL QRLASIETQR RFYKTAVFFG 120 CKRGEIELGM SNNQQNLEMK IQNLFSAMEF PRPTDQQQNK PSSSSSQSMD SPEYTSLFYN 180 FASSSSFHLQ PEQPAAVIRE THPSIINQHR TTNTQSIPIT AKTATNTATS SVNASHLQHP 240 LLQNIPFPTA ETTDAALTKA YLAILSSPSS SSTGGEKSCL PYGFQVRQRA SAFTSYQSPS 300 STQKRLDLRR QTLLKGAIAF YRGIHFRRIQ ELSLQGSGRP TSNQLHHMIS ERKRREKINE 360 SFQALRSLLP PGTKKDKASV LRTTKEYLSS LKAQLSELNK RNQLMEAQLI TRNEPTSPNT 420 TSLDVSTNER VTVRVTPVSE STSRERMVDL QVILRMETSV PDLVIRVLEF LKQVKEATMV 480 SMEAQTHQET TSTNNQFPTN WVTFRLRIEG EEWDESAFIE AIRRLLADLA S*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MDSVFQLGNG DRVSYLCSLM QSFGASYICL WTYSPDLKFL YCEDGHFQEE ASSSTGGVSS  60
ISLRLFNEYK HSVFPVGNDL VPGLAFRDKI LSLKLQEIDL QRLASIETQR RFYKTAVFFG  120
CKRGEIELGM SNNQQNLEMK IQNLFSAMEF PRPTDQQQNK PSSSSSQSMD SPEYTSLFYN  180
FASSSSFHLQ PEQPAAVIRE THPSIINQHR TTNTQSIPIT AKTATNTATS SVNASHLQHP  240
LLQNIPFPTA ETTDAALTKA YLAILSSPSS SSTGGEKSCL PYGFQVRQRA SAFTSYQSPS  300
STQKRLDLRR QTLLKGAIAF YRGIHFRRIQ ELSLQGSGRP TSNQLHHMIS ERKRREKINE  360
SFQALRSLLP PGTKKDKASV LRTTKEYLSS LKAQLSELNK RNQLMEAQLI TRNEPTSPNT  420
TSLDVSTNER VTVRVTPVSE STSRERMVDL QVILRMETSV PDLVIRVLEF LKQVKEATMV  480
SMEAQTHQET TSTNNQFPTN WVTFRLRIEG EEWDESAFIE AIRRLLADLA S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	356	ERKRRE
2	352	357	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-57	bHLH family protein