PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AUR62027113-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18889.8 Da PI: 9.4889 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.7 | 2.4e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr+g +KKA+ELS+LCdae+a+i+fss++klye+s+ AUR62027113-RA 9 KKIENIAARQVTFSKRRKGFIKKAQELSTLCDAEIALIVFSSSDKLYEFST 59 68***********************************************96 PP | |||||||
2 | K-box | 36.5 | 2e-13 | 92 | 144 | 20 | 72 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 + a + ke+e ++e+R+l+GedLe L ++eL ++e+q+ek+ +++R K AUR62027113-RA 92 DCAVVSKEVEVKRQELRQLKGEDLEGLGFEELVKVERQIEKAFTRVRRMKVGK 144 5666788899999**********************************999655 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence |
MVRSRIQIKK IENIAARQVT FSKRRKGFIK KAQELSTLCD AEIALIVFSS SDKLYEFSTS 60 RVTRVIQRYM RHTEKLPDDE QLDPYPVFLE DDCAVVSKEV EVKRQELRQL KGEDLEGLGF 120 EELVKVERQI EKAFTRVRRM KVGKLASEFL PSLHNTVHDF W* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24540.1 | 4e-33 | MIKC_MADS family protein |