PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62024469-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 190aa MW: 21711.9 Da PI: 9.7478 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.7 | 2.1e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ nrqvtfskRr+g++KKA+ELSvLCd ++a+iifs tgk y++ AUR62024469-RA 9 KTIENTNNRQVTFSKRRTGLIKKANELSVLCDCDIALIIFSCTGKKYDFV 58 68*******************************************99996 PP | |||||||
2 | K-box | 53.1 | 1.4e-18 | 102 | 181 | 17 | 97 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +++ +++e+ +L+ + +l+G+ L+sL++ eLq+Le++L +++ +iR+kK+++l+eq e+++++e++++e n aLrk+ AUR62024469-RA 102 PDSDVNSMREELTKLRASCLQLQGKRLDSLTFLELQNLEKRLLEGIMSIRNKKERILREQWERSKQQEEKISE-NAALRKE 181 457899**************************************************************99986.5567776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MGRGKIMIKT IENTNNRQVT FSKRRTGLIK KANELSVLCD CDIALIIFSC TGKKYDFVSS 60 KTTMENMLQR YKDFVANRSA TAASNSSNNA ATVEHQLVEY NPDSDVNSMR EELTKLRASC 120 LQLQGKRLDS LTFLELQNLE KRLLEGIMSI RNKKERILRE QWERSKQQEE KISENAALRK 180 EVCVLITNN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 5e-43 | MIKC_MADS family protein |