PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62021261-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 294aa MW: 31325.9 Da PI: 8.4953

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62021261-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.7	1.4e-36	61	134	3	77
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaes 77 ++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+p+i+e+tgt++++a ++ + AUR62021261-RA 61 VRKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIKWLLERAEPSIIEATGTGTIPAIAVsV--N 134 79*************************************************************9999955531..1 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MEDEGNNSSS NNDTYSRNSG DFPATDPLPP VDHSESTAII PAALKVEPTD AVTLASPPPL 60 VRKRPSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK SDGETIKWLL ERAEPSIIEA 120 TGTGTIPAIA VSVNGTLKIP TTSSGKDEDD YGGKKRRRTN NTPGPPPQGL VPIWPANFFM 180 MPNAAGGGQQ AQFWAAPVFG LAARPINNFV SEVVPGMSLS GGRNETGVGP SSEIYDKNHQ 240 KRELQLMGSR PINETNHHNN HQGMSQEQVQ LQVQAGGSSN SATPPPSSSS QAV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-49	TCP family protein