PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017316-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24862.4 Da PI: 9.7641

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017316-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.5	2.3e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+s rqvtfskRrng+lKKA+ELSvLC+aeva+iifs+tgklye++s AUR62017316-RA 9 KRIENDSSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSPTGKLYEFAS 59 79***********************************************86 PP
2	K-box	65.9	1.4e-22	84	173	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++++ + ++++ L+k++++L+ ++R+llG++Le +s+ eLq+Le+qL+ksl++iR+kKn l++e+i++l ek l +en +L++kl AUR62017316-RA 84 SSDSNMLQFKEDAHELEKKLKSLEISKRKLLGDGLEACSIDELQELEKQLDKSLSNIRAKKNALFREKIDKLYDEEKLLLKENARLKEKL 173 678899999******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MVRGKTQMKR IENDSSRQVT FSKRRNGLLK KAFELSVLCE AEVALIIFSP TGKLYEFASS 60 SATRTIDRYQ KHMKELRGVK SKVSSDSNML QFKEDAHELE KKLKSLEISK RKLLGDGLEA 120 CSIDELQELE KQLDKSLSNI RAKKNALFRE KIDKLYDEEK LLLKENARLK EKLHLSSPDS 180 QRSRQNEDDQ QNSAQDVETE LFIGLPESRN MRLLQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-59	MIKC_MADS family protein