PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62016135-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CAMTA

Protein Properties

Length: 933aa MW: 105523 Da PI: 7.5403

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62016135-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.4	4e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 +ke k+rwl+++ei+aiL n++ ++++ ++ + p+ g+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+n++f AUR62016135-RA 29 MKEaKSRWLRPNEIHAILFNYAYFTIHVKPVNLPRGGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGTEERIHVYYAHGEDNSNFV 123 45559**************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rrcywlL+++le+ivlvhy+e++ AUR62016135-RA 124 RRCYWLLDKSLEHIVLVHYRETQ 146 ******************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence
MESGFNGGLA GFEIHGFRTM EDLDIPNIMK EAKSRWLRPN EIHAILFNYA YFTIHVKPVN 60 LPRGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNS 120 NFVRRCYWLL DKSLEHIVLV HYRETQELQV SPITPTNSSF HSDLSDYSAS PLLSRGNDCM 180 VDQVNYPAMK ACSDIGDGIN VNNHEMRLHE INTLDWDELL LLSDPTEATL TTKEEQTPYL 240 HQDKQPAAYT SENNGSILST GNPHLDMLTS RNSMNPVAGT SPAQITHVGD IYLSLMGVQK 300 DPKVEGKVYD MGTVGAGDLS NKMAKDGLQS QDSFGRWMNE IIVDSPESVD DPSFESSGAT 360 SHGSLVSSGA VNHEGPVPAQ IFCITDISPT WTFSTEGAKI LVVGFFHQEY RHLAKSNVYC 420 VCGDTCVPAE IIQVGVFRCM VSPQSPGSVN FYLSIDCSTP ISQVLTFEFR SPAVTNQAVR 480 EDNSQWDMFR IQMRLAFLLF TTSRSLDILS SKVSQSALKE GKNFALKYSN IADSWAYFAK 540 LIQSGKITLE RAKDNLFELS IKSRLKEWLL ERVVDGSKIS ERDAEGQGVL HLCAILGYTW 600 AIYLFSYSGL SLDFRDKFGW TALHWAAYYG RENMVAVLLS AGAKPNLVTD PNSDNPGGCT 660 AADIASKQGF EGLAAYLSEK ALIQQFEDMK VAGNVGGSLE THTYETANPS NITEEDLYLK 720 DTLAAYRTAA DAAARIQVAF RENALKQKTK TVEFLNPETE AQYIVAAMKI QHAFRNYELR 780 KQMAAAARIQ HRFRTWKFRR EFLNMRRKAI KIQAAYRGFQ VRRQYRKFIW SVGILEKAIL 840 RWRLRRKGLR GVKVEIEEPV DDQRRDSDTE EDFYRASRKQ AEERVEKAVV RVQSMFRSKQ 900 AQQEYRRMKL AHTQAQLHFE DSGNPNGYMT DI*

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence

MESGFNGGLA GFEIHGFRTM EDLDIPNIMK EAKSRWLRPN EIHAILFNYA YFTIHVKPVN  60
LPRGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGTEERIH VYYAHGEDNS  120
NFVRRCYWLL DKSLEHIVLV HYRETQELQV SPITPTNSSF HSDLSDYSAS PLLSRGNDCM  180
VDQVNYPAMK ACSDIGDGIN VNNHEMRLHE INTLDWDELL LLSDPTEATL TTKEEQTPYL  240
HQDKQPAAYT SENNGSILST GNPHLDMLTS RNSMNPVAGT SPAQITHVGD IYLSLMGVQK  300
DPKVEGKVYD MGTVGAGDLS NKMAKDGLQS QDSFGRWMNE IIVDSPESVD DPSFESSGAT  360
SHGSLVSSGA VNHEGPVPAQ IFCITDISPT WTFSTEGAKI LVVGFFHQEY RHLAKSNVYC  420
VCGDTCVPAE IIQVGVFRCM VSPQSPGSVN FYLSIDCSTP ISQVLTFEFR SPAVTNQAVR  480
EDNSQWDMFR IQMRLAFLLF TTSRSLDILS SKVSQSALKE GKNFALKYSN IADSWAYFAK  540
LIQSGKITLE RAKDNLFELS IKSRLKEWLL ERVVDGSKIS ERDAEGQGVL HLCAILGYTW  600
AIYLFSYSGL SLDFRDKFGW TALHWAAYYG RENMVAVLLS AGAKPNLVTD PNSDNPGGCT  660
AADIASKQGF EGLAAYLSEK ALIQQFEDMK VAGNVGGSLE THTYETANPS NITEEDLYLK  720
DTLAAYRTAA DAAARIQVAF RENALKQKTK TVEFLNPETE AQYIVAAMKI QHAFRNYELR  780
KQMAAAARIQ HRFRTWKFRR EFLNMRRKAI KIQAAYRGFQ VRRQYRKFIW SVGILEKAIL  840
RWRLRRKGLR GVKVEIEEPV DDQRRDSDTE EDFYRASRKQ AEERVEKAVV RVQSMFRSKQ  900
AQQEYRRMKL AHTQAQLHFE DSGNPNGYMT DI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	88	RKKLRNFRKDGHNWKKK
2	72	89	RKKLRNFRKDGHNWKKKK
3	73	89	RKKLRNFRKDGHNWKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein