PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62013428-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 25929.1 Da PI: 7.2253 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.8 | 3.4e-19 | 9 | 42 | 1 | 34 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krien++nrqvt+skRrngi+KKA+E+ vLCda+ AUR62013428-RA 9 KRIENTTNRQVTYSKRRNGIIKKASEITVLCDAK 42 79******************************96 PP | |||||||
2 | K-box | 49.3 | 2.1e-17 | 40 | 94 | 13 | 67 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRs 67 +a++l++e+++ kke++n+ e+Rhl+Ged+ +L + eL+qLe++Le++++++R AUR62013428-RA 40 DAKNLSNEIERNKKENDNMHIELRHLKGEDIATLPFTELRQLEDALEHGITSVRR 94 3589**************************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MGRGKIEIKR IENTTNRQVT YSKRRNGIIK KASEITVLCD AKNLSNEIER NKKENDNMHI 60 ELRHLKGEDI ATLPFTELRQ LEDALEHGIT SVRRLEEERK ELTYVLGFKW GRVSAKVGEG 120 GAATRGNGWV GGLNLPRQKK SWLVEECVGV RGLLVEECVG VKGLLVEECV GVRGLLVEEC 180 VGVRGLLVEE CVGVRGLLVE ECVGVRGLLV EECVGVRGLL VEECVGGRGL LVGFL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 4e-33 | MIKC_MADS family protein |