PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62013427-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 143aa MW: 16273.5 Da PI: 9.4752 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87 | 1.1e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrngi+KKA E+ vLCda+v+v+if+++gk++ y AUR62013427-RA 9 KRIENSTNRQVTFSKRRNGIIKKATEITVLCDAKVSVVIFANNGKMHAYH 58 79*********************************************996 PP | |||||||
2 | K-box | 62.1 | 2.1e-21 | 71 | 140 | 1 | 70 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 yq+ sg +l++ak+e+l++e++++kke++ ++ e+Rhl Ged++sL++ +L +Le++L+ + ++ ++K AUR62013427-RA 71 YQEFSGAKLWDAKHENLKNEIDRVKKENDDMRIELRHLNGEDIGSLQYPDLIRLEEALDIGTARVNDRKA 140 78889999************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence |
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KATEITVLCD AKVSVVIFAN NGKMHAYHSP 60 STTLEHILDK YQEFSGAKLW DAKHENLKNE IDRVKKENDD MRIELRHLNG EDIGSLQYPD 120 LIRLEEALDI GTARVNDRKA SI* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-64 | MIKC_MADS family protein |