PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62007887-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 253aa MW: 29059 Da PI: 9.7908 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.8 | 1.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+nrqvtfskRr g+ KKA+E+SvLCd eva+i+fs++gkl+eyss AUR62007887-RA 9 KKIENKINRQVTFSKRRSGLAKKAHEISVLCDSEVALIVFSHRGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 100.7 | 2e-33 | 88 | 174 | 14 | 100 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++ ++akLk+++e Lqr++Rh+lG++L+sL++keLq+LeqqL+++lk++RskKn+l++e+i+e qkke+++q +n++L+kk++e AUR62007887-RA 88 QVNWTFDFAKLKAKLELLQRNHRHYLGQELDSLNVKELQSLEQQLDTALKNVRSKKNQLMHESISEFQKKERAIQVHNNMLSKKIKE 174 568999******************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MGRGRVQLKK IENKINRQVT FSKRRSGLAK KAHEISVLCD SEVALIVFSH RGKLFEYSSD 60 SSMENILERY ERYSYAERRL TSNDPDLQVN WTFDFAKLKA KLELLQRNHR HYLGQELDSL 120 NVKELQSLEQ QLDTALKNVR SKKNQLMHES ISEFQKKERA IQVHNNMLSK KIKEKGKNMA 180 QVQQLQWQEQ QSPPRNHQEG PSAASNFLLP PPPPSLNMGG AYQGELGGEG RRNDLDLTLE 240 PIYSCQMGCF TN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 4e-89 | MIKC_MADS family protein |