PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62003417-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 298aa MW: 32534.9 Da PI: 7.3982

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62003417-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.3	4.5e-37	118	212	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......k 89 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq a+++i+++tg+++++as+ +++s+s++++s ++ + AUR62003417-RA 118 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGLKSDGETIQWLLQHAEQSIIAATGSGTIPASALaASGASVSQQGTSIISginqqqhH 212 6999****************************************************************888544444444443333343222111 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MDPKGTKQPP SQEDVPPPPL LQPHYLLSLP HPSITTSSST LIPINMVDNS HNHLNPTPNN 60 SIKPSQIKDF QILIADKQNQ QNHQQHEQHQ QQEDDQHQQQ QQNQQQKKQQ QQNQQLGPKR 120 SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGLKSDG ETIQWLLQHA EQSIIAATGS 180 GTIPASALAA SGASVSQQGT SIISGINQQQ HHHHKIDDLG GPSNRPTNWA AALVGMGAAG 240 ELGLSQDVHV GVLTPQALSQ IYQQMGHSRS VHDVGSGLSS LHHQQQSDSK DDSQDSG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	3e-39	TCP family protein