PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022983017.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 350aa MW: 39588 Da PI: 7.255

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022983017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	170	189	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_022983017.1 170 FSCPVCFKTFNRYNNMQMHM 189 89*****************9 PP
2	zf-C2H2	14.5	0.0001	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_022983017.1 254 FMCRKCGKAFAVRGDWRTHEKNC 276 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDDPSTNFFK NLFKFNPSPP NPHPPPPPPP YFLPTHLHAP PSSPPLRQAL PLLRLSPTRS 60 SQNNNAPQNF SSSSSSSSAA AAANVSVTVA LHIGLPSPSA SEMATLLLSS NQNQEEEDED 120 EDDDEHELEE EEEEEEVAAI SGLCLSNSRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN 180 RYNNMQMHMW GHGSQYRRGP ESLRGTQPTG MLRLPCYCCS PGCRNNIDHP RAKPLKDFRT 240 LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA 300 FGNGHAAYNN SNANNNPDHR HRHHHCHHHR HHGIDEDEDP AYSEVEQDHD

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDDPSTNFFK NLFKFNPSPP NPHPPPPPPP YFLPTHLHAP PSSPPLRQAL PLLRLSPTRS  60
SQNNNAPQNF SSSSSSSSAA AAANVSVTVA LHIGLPSPSA SEMATLLLSS NQNQEEEDED  120
EDDDEHELEE EEEEEEVAAI SGLCLSNSRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN  180
RYNNMQMHMW GHGSQYRRGP ESLRGTQPTG MLRLPCYCCS PGCRNNIDHP RAKPLKDFRT  240
LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA  300
FGNGHAAYNN SNANNNPDHR HRHHHCHHHR HHGIDEDEDP AYSEVEQDHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-126	C2H2 family protein