PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024984921.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SRS

Protein Properties

Length: 361aa MW: 40649.8 Da PI: 9.4412

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024984921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	23.5	1.5e-07	55	142	5	91
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv...kstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91 + +C CGn a+ C ++ C+ CC C+ hv st+ k+ + + l +++++++s+ ++++ + r+l s++ ++ ++ ++ XP_024984921.1 55 KPKCIKCGNVARSRCPYQACKSCCAKAQNPCHIHVlkgNSTFPD--KTPSSSSSLVDQHANETSSSgNAHRVTSLRQL-SNNFAQFNNLQT 142 568*******************************9543455532..22222223322223333322122222333332.333333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MATASPALSN NSADTTSITG SASPAVVRTT STTTTPMVMS NSSINTSKNL RGLNKPKCIK 60 CGNVARSRCP YQACKSCCAK AQNPCHIHVL KGNSTFPDKT PSSSSSLVDQ HANETSSSGN 120 AHRVTSLRQL SNNFAQFNNL QTPSRARKPL TRKEASQINE WRFSKLKEYK DRNIEIENEA 180 FDRYLQNITL LEEVFAVNSK LEEPIKHESS MPIDDEIDGK SEMMVSKLKM KLRADQIRTE 240 NFRDRMRFIV NNGLRKLKSE TPTGNEETEL VNRPKKARYS NLVELNKKLS NARTVEDLKS 300 CQLLKSQLFN RQQSENMETP DQLDAKSESS PSKWFRTVTI NQEALSHIDA QFTSLEEIEH 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MATASPALSN NSADTTSITG SASPAVVRTT STTTTPMVMS NSSINTSKNL RGLNKPKCIK  60
CGNVARSRCP YQACKSCCAK AQNPCHIHVL KGNSTFPDKT PSSSSSLVDQ HANETSSSGN  120
AHRVTSLRQL SNNFAQFNNL QTPSRARKPL TRKEASQINE WRFSKLKEYK DRNIEIENEA  180
FDRYLQNITL LEEVFAVNSK LEEPIKHESS MPIDDEIDGK SEMMVSKLKM KLRADQIRTE  240
NFRDRMRFIV NNGLRKLKSE TPTGNEETEL VNRPKKARYS NLVELNKKLS NARTVEDLKS  300
CQLLKSQLFN RQQSENMETP DQLDAKSESS PSKWFRTVTI NQEALSHIDA QFTSLEEIEH  360
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	4e-89	SRS family protein