PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G32730.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 327aa    MW: 36333.2 Da    PI: 9.7734
Description
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G32730.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70221.46.7e-072895571
       DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaa 71
                 + +C +CGn a+  C ++ C+ CC   +  C  hv      a+   e+ q+ +++ss+++a++    ++ +
  AT1G32730.1 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKV---ASTSGEKTQAPSTPSSEQKATEgtpgSTTR 95
                 568*******************************9642...333334333333333333333322322222 PP
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000293anatomyguard cell
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MATSSPSLSN NGLSSVVTPP KTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI  60
HVLKVASTSG EKTQAPSTPS SEQKATEGTP GSTTRVSSIR QLSSNFAQFN NLNASSRQRK  120
PLTIKDAQAL NEWRFTKLKE YRDRNIEVEN EAFDRYMSNV NLLEEAFSFT SVPDEESHGT  180
AAPEQNKEEN IVSELKLRLR SNSARTESFK KRIAETVKAG LVKLKRLDLG SSSDDQDDIK  240
RRVKRKKWEE KGSALNEIID KLNKARTEED LKSCLEMKSK LCGQVSPTAA SEKNKIFPGV  300
VRKVEMSEEA LQKIAENLQS FDKVGML
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.169790.0bud| flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible261710_at0.0
Expression AtlasAT1G32730-
AtGenExpressAT1G32730-
ATTED-IIAT1G32730-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G32730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G32730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0847500.0AY084750.1 Arabidopsis thaliana clone 116730 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564407.10.0electron carrier/iron ion-binding protein
TrEMBLA0A178WNL10.0A0A178WNL1_ARATH; Uncharacterized protein
TrEMBLQ9LPJ10.0Q9LPJ1_ARATH; Electron carrier/iron ion-binding protein
STRINGAT1G32730.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73621317
Representative plantOGRP597255
Publications ? help Back to Top
  1. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  2. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]