PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83490

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 597aa MW: 65083.4 Da PI: 7.5488

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83490	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.4e-30	343	401	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d ++++tYeg+H h+ OMO83490 343 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCADDRAILITTYEGNHSHP 401 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MDKIRGRASS LFDTSAVSAA DVTANNFFHH KQSSLFGIDP FRKSFNKASS SSSSCWKLQA 60 AAMADDPLVV ESSSASDGKR LVNEMDFFAG ERSSKALQQV HINKASSAAA DHNDHNLHVK 120 IESEHHQDQN NEPEVDVNTG LNLLTTNSAA NDQKSVPQIL KEKQRVNQLA DIRAELERIK 180 AENQRLKVTL NQVNSSYYAL QMHLVSLMQR QRINPRPETE TTDNNQETII ARQFMDLGQA 240 AAKSEKDIND QISESSSEGR FQEESGSGSP GNAIVESMDR IRQQKNINND RKEDDDQPAG 300 WLSPNKVPKF NSSRDVEQAQ ETMAMIRKAR VSVRARSEAS MISDGCQWRK YGQKMAKGNP 360 CPRAYYRCTM ATGCPVRKQV QRCADDRAIL ITTYEGNHSH PLPPAAMAMA STTSAAASML 420 LSGSMPSADG MMNTNAILPK AMLPCSSSLV TLSASAPFPT VTLDLTHTPN NQRPSLNQLV 480 HGAPNSPNWP HHNISSLPHL VGHPIYNQSK LLGFLGSQGT DQHHPHLAQN LQLQSHSMAD 540 SVSAATAAIT ADPNFTAALV AAITSIIGNP HRDNNIIGNN SNNNGATTPR NTGDNNT

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MDKIRGRASS LFDTSAVSAA DVTANNFFHH KQSSLFGIDP FRKSFNKASS SSSSCWKLQA  60
AAMADDPLVV ESSSASDGKR LVNEMDFFAG ERSSKALQQV HINKASSAAA DHNDHNLHVK  120
IESEHHQDQN NEPEVDVNTG LNLLTTNSAA NDQKSVPQIL KEKQRVNQLA DIRAELERIK  180
AENQRLKVTL NQVNSSYYAL QMHLVSLMQR QRINPRPETE TTDNNQETII ARQFMDLGQA  240
AAKSEKDIND QISESSSEGR FQEESGSGSP GNAIVESMDR IRQQKNINND RKEDDDQPAG  300
WLSPNKVPKF NSSRDVEQAQ ETMAMIRKAR VSVRARSEAS MISDGCQWRK YGQKMAKGNP  360
CPRAYYRCTM ATGCPVRKQV QRCADDRAIL ITTYEGNHSH PLPPAAMAMA STTSAAASML  420
LSGSMPSADG MMNTNAILPK AMLPCSSSLV TLSASAPFPT VTLDLTHTPN NQRPSLNQLV  480
HGAPNSPNWP HHNISSLPHL VGHPIYNQSK LLGFLGSQGT DQHHPHLAQN LQLQSHSMAD  540
SVSAATAAIT ADPNFTAALV AAITSIIGNP HRDNNIIGNN SNNNGATTPR NTGDNNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-111	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO83490