PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_08.558
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family AP2
Protein Properties Length: 308aa    MW: 35548.6 Da    PI: 7.6155
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_08.558genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-16110161155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +   g +k+ +lg+f t eeAa a++ a+ +++g
  evm.model.AsparagusV1_08.558 110 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFSTQEEAAHAYDIAAIEYRG 161
                                   89****99**********99966...3.6*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MQIKSEENSS KRRTIEYALE HTERGKIVKR RRRQPPATVC VNVYLGAYDE EESAARSYDL  60
AALKYWGPST FTNFPISDYE REFQAMLNVT KEEYLASLRR KSSGFSRGVS KYRGVARHHH  120
NGRWEARIGR VFGNKYLYLG TFSTQEEAAH AYDIAAIEYR GINAVTNFDL RTYIKWLRPE  180
SYSNDVNIHR DTISNKCQLQ DIQLPNNPFL TCNTEPIPQY NLFTGDEFLP RQISSSKTSV  240
TALGLLLKSS IFRQLMEKNG SIISEEISRD DDKDQVDGLR DQSFLDGGED LQHFYAQNED  300
SRLYVRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11133KRRTIEYALEHTERGKIVKRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-66AP2 family protein