PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.1224

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

AP2

Protein Properties

Length: 365aa MW: 40490.3 Da PI: 9.9518

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.1224	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.3	2.5e-15	31	90	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g evm.model.AsparagusV1_07.1224 31 SVFRGVTRHRWTGRYEAHLWDnTCRrEGqkRKgRQVYLGGYDKEEKAARAYDLAALKYWG 90 689****************665564475337***********************98 PP
2	AP2	51.8	2.1e-16	133	184	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+fgt+ eAa+a++ a+ k++g evm.model.AsparagusV1_07.1224 133 SVYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFGTEAEAAEAYDVAAIKFRG 184 78**************988532...5******99**********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MEVMKEAKAK AKGTAMTTKA MKVVGSGQRS SVFRGVTRHR WTGRYEAHLW DNTCRREGQK 60 RKGRQVYLGG YDKEEKAARA YDLAALKYWG PSAPTNFPVD RYYNEIEIMQ NMTKQEFIAS 120 IRRNSSGFSR GASVYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFGTEAE AAEAYDVAAI 180 KFRGCNAVTN FALSRYNVEA IANSELPVGT SAKRMQQQKA LQPKTSMTAI TSTELSTRAL 240 PERTKQSAHG NNSPFLTITS VNKTICNWAT GNFQTNGAPQ QTMESSNALE HPNNDPYASV 300 HNLFQLQSST VDQSSISLAY YNMDDASSDP CGQNFCWPLV NSQHTRQVHC GTLAQGTELL 360 RLTS*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MEVMKEAKAK AKGTAMTTKA MKVVGSGQRS SVFRGVTRHR WTGRYEAHLW DNTCRREGQK  60
RKGRQVYLGG YDKEEKAARA YDLAALKYWG PSAPTNFPVD RYYNEIEIMQ NMTKQEFIAS  120
IRRNSSGFSR GASVYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFGTEAE AAEAYDVAAI  180
KFRGCNAVTN FALSRYNVEA IANSELPVGT SAKRMQQQKA LQPKTSMTAI TSTELSTRAL  240
PERTKQSAHG NNSPFLTITS VNKTICNWAT GNFQTNGAPQ QTMESSNALE HPNNDPYASV  300
HNLFQLQSST VDQSSISLAY YNMDDASSDP CGQNFCWPLV NSQHTRQVHC GTLAQGTELL  360
RLTS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65510.1	1e-103	AP2 family protein