PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.2339

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

AP2

Protein Properties

Length: 532aa MW: 58437.6 Da PI: 7.2868

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.2339	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.3	6.1e-16	197	256	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g evm.model.AsparagusV1_03.2339 197 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 256 789****************988886678446***********************98 PP
2	AP2	47.2	5.7e-15	299	350	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm.model.AsparagusV1_03.2339 299 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 350 57**************988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MPIKSDGSLC IMEALSRSQH QGMVQSQSPK LEDFLGCSGP NIGAHHQYGG NDRETTTTAT 60 SASASTMYYS QNQEALDLLQ TQQQYFHPLQ HMYHHHHQEL GGEDDGFSSS IKNWASVGGM 120 GYGDLHSLSL SMSPGSQSSY VAATQHSVAS DHSGVAAVAA EAMPLDVVVA KKRGNGKGGQ 180 KQPVHRKSID TFGQRTSQFR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QVYLGGYDME 240 EKAARAYDLA ALKYWGPSTH INFPLENYNQ ELEEMKNMSR QEYVAHLRRK SSGFSRGASI 300 YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDVAAIKFRG ASAVTNFDIT 360 RYDVEKIMAS NTLLSGENAR RVKSIEADIV NNTTTTESNN NSTSSDWKMA LYESPTQTLQ 420 NSESMVDQDQ PVSVAFHGFI GMETVNYVQG IDESGKMAGT HISNPSSLVT SLNSSREGSP 480 DRNGLSVVYS KGEPQFNVGS SPSLGSWMPS TQIRTAISMA HMPMFAAWSD A*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MPIKSDGSLC IMEALSRSQH QGMVQSQSPK LEDFLGCSGP NIGAHHQYGG NDRETTTTAT  60
SASASTMYYS QNQEALDLLQ TQQQYFHPLQ HMYHHHHQEL GGEDDGFSSS IKNWASVGGM  120
GYGDLHSLSL SMSPGSQSSY VAATQHSVAS DHSGVAAVAA EAMPLDVVVA KKRGNGKGGQ  180
KQPVHRKSID TFGQRTSQFR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QVYLGGYDME  240
EKAARAYDLA ALKYWGPSTH INFPLENYNQ ELEEMKNMSR QEYVAHLRRK SSGFSRGASI  300
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDVAAIKFRG ASAVTNFDIT  360
RYDVEKIMAS NTLLSGENAR RVKSIEADIV NNTTTTESNN NSTSSDWKMA LYESPTQTLQ  420
NSESMVDQDQ PVSVAFHGFI GMETVNYVQG IDESGKMAGT HISNPSSLVT SLNSSREGSP  480
DRNGLSVVYS KGEPQFNVGS SPSLGSWMPS TQIRTAISMA HMPMFAAWSD A*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-130	AP2 family protein