PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551573.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 510aa MW: 57490.7 Da PI: 7.4269

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	338	384	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR riN+++ Lr llP+ K + +++L k+ +Y++ L XP_028551573.1 338 LHHVMAERKRRVRINESLRDLRMLLPPG-----SKKDYVTVLSKTKDYLRTL 384 5799********************95.....4889999******9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MDSLFLLSPE ARSYFLQTEA QNLGCAYICL WYYLPHPSNC LISMDGWYNE DDRQPSSSSG 60 GYKRKLFEDY KRSFFSVESG YVPGLAFKQG LPYIQLEDSD LMNSASTFAQ LEFYKVTLMA 120 CALIAEAGIK KAVFIGCQCG EIELGSLTAN NANIQMLFNQ DFINFQRSQP QLGDLLLPDQ 180 KILSSSSTSS LKSLSVGSPE YTSFILSNPA TDQSGSDQAF KLGKALTPHH QINMDSYNLY 240 RNILLPSPQS DDDALTRAIL AVLSASSQKD LQQQEESRVT QASSSFQPFG SISASFEPNL 300 RLQGQRMIKK SISLLRKMYS LKHAEARRQE RLPISSKLHH VMAERKRRVR INESLRDLRM 360 LLPPGSKKDY VTVLSKTKDY LRTLKAQINE LEERNRKLEM VLKSNKQPPQ VTESNERVEI 420 QVIRASESTS EAQQIYLLII VREEVNMIDF LLKVLECLKR MGIMNLTTID ASSNPTMASL 480 TLQVQASDWD EESLKKSLTM AILDADKGTP

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MDSLFLLSPE ARSYFLQTEA QNLGCAYICL WYYLPHPSNC LISMDGWYNE DDRQPSSSSG  60
GYKRKLFEDY KRSFFSVESG YVPGLAFKQG LPYIQLEDSD LMNSASTFAQ LEFYKVTLMA  120
CALIAEAGIK KAVFIGCQCG EIELGSLTAN NANIQMLFNQ DFINFQRSQP QLGDLLLPDQ  180
KILSSSSTSS LKSLSVGSPE YTSFILSNPA TDQSGSDQAF KLGKALTPHH QINMDSYNLY  240
RNILLPSPQS DDDALTRAIL AVLSASSQKD LQQQEESRVT QASSSFQPFG SISASFEPNL  300
RLQGQRMIKK SISLLRKMYS LKHAEARRQE RLPISSKLHH VMAERKRRVR INESLRDLRM  360
LLPPGSKKDY VTVLSKTKDY LRTLKAQINE LEERNRKLEM VLKSNKQPPQ VTESNERVEI  420
QVIRASESTS EAQQIYLLII VREEVNMIDF LLKVLECLKR MGIMNLTTID ASSNPTMASL  480
TLQVQASDWD EESLKKSLTM AILDADKGTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-26	bHLH family protein