PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027184702.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 849aa    MW: 93056.2 Da    PI: 6.2896
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027184702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-182381357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_027184702.1 23 KYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                    6789*****************************************************97 PP
2START172.62.6e-541703772204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l+
  XP_027184702.1 170 VAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSVIPTGngGTIELI 263
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   s  +vRae+lpSg+li+p+++g+s v++v+h+dl+ ++++++lr+l+
  XP_027184702.1 264 YMQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppSTCFVRAEMLPSGCLIRPCEGGGSIVHIVDHIDLDVWSVPEVLRPLY 358
                     ****************************************99999888999******************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k+++a+l++ +
  XP_027184702.1 359 ESSKILAQKMTMAALRHIR 377
                     ***************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    
MALSIHRDSI SGGSKQQQMD NSKYVRYTPE QVEALERVYA ECPKPSSLRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKEASRLQT VNRKLSAMNK LLMEENDRLQ KQVSQLVYEN  120
GYMRTQIQTV STATTDTSCE SVVMTGQQQQ QNPTQHPQRD ANNPAGLLAV AEETLAEFLG  180
KATGTAVDWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRPSWF  240
RDCRCLDVLS VIPTGNGGTI ELIYMQTYAP TTLASARDFW TLRYTTSLED GSLVICERSL  300
TSSTGGPTGP PSTCFVRAEM LPSGCLIRPC EGGGSIVHIV DHIDLDVWSV PEVLRPLYES  360
SKILAQKMTM AALRHIRQIA QETSGEVHYS GGRQPAVLRA LSQRLCRGFN DAVNGFVDDG  420
WSIMGSDGAE DVTITINSSP SKILGSQYST LSMLPSFGGV MCAKASMLLQ NVPPALLVRF  480
LREHRSEWAD YGVDAYAAAS LKASPYAIPC ARPGSFPSSQ VILPLAQTVE HEEFLEVVRL  540
EGHAFSPEDI ALSRDMYLLQ LCSGVDENAA SSCAQLVFAP IDESFGDDAP LLPSGFRVIP  600
LDAKSDGPGA TRTLDLASAL EVGTGGARST AEADPKNYNL RSVLTIAFQF TFENHYRENV  660
AAMARQYIRS IVGSVQRVAM AIAPSRLSSQ MVPKSLPGSP EAVTLARWIW RSYRLQTGGE  720
LLQVDSHSGD AILKQLWHHS DAIMCCSVKA NASAVFTFAN QAGLDMLETT LVALQDIMLD  780
KILDEAGRKV LLSEFSKIMQ QGFAYLPAGV CSSSMGRPIS YEQAVAWKVL NDDDSNHCLA  840
FMFMNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein