PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027184147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 308aa MW: 34402 Da PI: 4.4821 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.4 | 3.7e-13 | 31 | 61 | 17 | 47 |
HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgkly 47 r g++KKA ELSvLC a+v v++ s+ gk++ XP_027184147.1 31 RRGLFKKAAELSVLCSADVVVLVQSPAGKVF 61 88**************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence |
MEETVIVVKK RLRSKKFRRK PNCKSRFRSA RRGLFKKAAE LSVLCSADVV VLVQSPAGKV 60 FATGGHASVD SIIDRYVAAL QGKHQEEEEE KKYLDIMKEI EIEKAKGKLL MQHKDDNSKG 120 FWWDLPVDNL ELDELVEHMD AMEILRQNVL TRAEAMAANN NVVDNNAIPA VVANDNPGDN 180 NAANNNVATN NNADFSSSVL IPNVSLDNFG GRPVILCESD NEDKVDGTDD PFMLENLNFE 240 TNSHQLLISG NPKLEADDEL FMFDNPNSLI DNNQLSMLAI PKLEIDVDEP LMLENPKSPI 300 TIDQLLML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 5e-20 | M-type_MADS family protein |