PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027182089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YC | ||||||||
Protein Properties | Length: 266aa MW: 29994.1 Da PI: 9.9444 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 34.4 | 4.7e-11 | 172 | 253 | 18 | 99 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlr.swlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + ++P+ ri+ki+k + +++ ea l ka e f lel r ++ a +++ + +a++v++ + fdfl di+p+ XP_027182089.1 172 QCKFPMNRIQKIMKDHDASARLAQEAIFLANKASEKF-LELYCReAYACAFLDHKKQVSYDHLASVVSKRKRFDFLSDIIPQR 253 779*********************************9.5777773788888999999***********************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MVGKRSISNG TRSKKLSKPE NPSAPKRKNR DEEEEKEEQE VLILESSSSK PERGKKVVTK 60 KAKKGAKEDS DDEDIRLLFE EKVASQIAVK EWGKIGKSGL MKNKKSGGAG SSSTPKEVEK 120 KKSKGKKKAV AEEEEREQES SGKKEMKNSK KKKNMVAVEE GDDENEREEG PQCKFPMNRI 180 QKIMKDHDAS ARLAQEAIFL ANKASEKFLE LYCREAYACA FLDHKKQVSY DHLASVVSKR 240 KRFDFLSDII PQRVKAEDAL AEVSDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-26 | NF-YC family protein |