PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027177611.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31448.2 Da    PI: 4.8915
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027177611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.22.4e-241058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    ri n++nrqvtfskRrngilKKA+EL vLCd+++a+ ++s++g++  +s
  XP_027177611.1 10 RIVNNTNRQVTFSKRRNGILKKAYELAVLCDIDIALFMVSPSGRISYFS 58
                    899****************************************998776 PP
2K-box19.34.8e-08112192989
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                     + +a++++++qe+ +L+ ++e  ++++R l  +  +  sl e+++ e++L ++l+ + ++K +ll+++ +  q+  +++++
  XP_027177611.1 112 VLSAQSQEYKQEIMNLQHQLEIAKEQLRLLEPDPQKFTSLGEIESSEERLSEALNLVEKRKRHLLTDHSSSYQETVEQINS 192
                     567889****************************9***********************************99998888766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MGRVKLPISR IVNNTNRQVT FSKRRNGILK KAYELAVLCD IDIALFMVSP SGRISYFSGT  60
KRIEDVMLQY FNLKDEERES DHDSEGIVHD KELGWYCLII LMSVLSWISS EVLSAQSQEY  120
KQEIMNLQHQ LEIAKEQLRL LEPDPQKFTS LGEIESSEER LSEALNLVEK RKRHLLTDHS  180
SSYQETVEQI NSVVQYIINA QVEGNRSLEN SEFSSWLDQH GHKTDANGSN CVSVGPDENG  240
ISSTSAISMT PPSQHSKFAS TCQPLRSEEA ANYETME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-55MIKC_MADS family protein