PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177157.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 767aa MW: 86794.2 Da PI: 5.0759

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.3	7.2e-19	606	653	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027177157.1 606 ITHEVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKERKV 653 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence
MAMEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KPHHLSAAAD 60 AAVIKTDIKW FMQLDTETIM WWRCLVQFWG LVRIGDKTYL TTCDQPFALC YYFDPDVKPL 120 CEYRKLCLEC LIPVDDDDDD DDDDDDDELI IGPPGRVFRS GIPEHAEDVH DYTSREYPQR 180 DYAVDRARYY WALPIYHPTR HLPVGVLEIV SPYVVGDLPR RQVLEKLQNL LQKVNLTTTC 240 VRLAEASSCQ DGEIAKIDKA LRNTKSIFKR PKHGLYYPET WTTSGEILSS REGVDFIRKG 300 QGVVGRAFSS KSACFCRDIR QLSITDYPLL LKARFLGYSS CFAVCLQSSC SNNCIYVLEF 360 FLPTNEKDYG DCRIMLNSIM EKLKKYLRSS FKIALGQELG QKLTVEVIKV TPEDEFDSFE 420 ICSTAGIEST PRLGKVQGGE GMMQLDFSSQ QVDAANGSMN GGVESTPRLA KAHGGEGMMQ 480 VDFSSQQVDA ANGYIKGVHG QQSGIVRSPP RPEHAQDFVN ISYQELNLAG VDVAHNSMNG 540 IYEQQDGIVR SSIGQVLMQN MVSIADYEPI VEDPERDDAS IEQSGNEVTN LKMQEPSCTL 600 KSDLGITHEV LEQNSMRKLE DAAKNIGVSR STLKRICREY GIHRWPPRKE RKVNQVFAKQ 660 KVVQPAIENV EEHHWLDATR LEDDSSMWMI KAKYQEDKIK FELSSSARKI DLENNIAQRF 720 NLSGGSFKIM YQDELNDWIL ITCDTDLSFC MKTLHKLGRT TIEVLVS

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence

MAMEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KPHHLSAAAD  60
AAVIKTDIKW FMQLDTETIM WWRCLVQFWG LVRIGDKTYL TTCDQPFALC YYFDPDVKPL  120
CEYRKLCLEC LIPVDDDDDD DDDDDDDELI IGPPGRVFRS GIPEHAEDVH DYTSREYPQR  180
DYAVDRARYY WALPIYHPTR HLPVGVLEIV SPYVVGDLPR RQVLEKLQNL LQKVNLTTTC  240
VRLAEASSCQ DGEIAKIDKA LRNTKSIFKR PKHGLYYPET WTTSGEILSS REGVDFIRKG  300
QGVVGRAFSS KSACFCRDIR QLSITDYPLL LKARFLGYSS CFAVCLQSSC SNNCIYVLEF  360
FLPTNEKDYG DCRIMLNSIM EKLKKYLRSS FKIALGQELG QKLTVEVIKV TPEDEFDSFE  420
ICSTAGIEST PRLGKVQGGE GMMQLDFSSQ QVDAANGSMN GGVESTPRLA KAHGGEGMMQ  480
VDFSSQQVDA ANGYIKGVHG QQSGIVRSPP RPEHAQDFVN ISYQELNLAG VDVAHNSMNG  540
IYEQQDGIVR SSIGQVLMQN MVSIADYEPI VEDPERDDAS IEQSGNEVTN LKMQEPSCTL  600
KSDLGITHEV LEQNSMRKLE DAAKNIGVSR STLKRICREY GIHRWPPRKE RKVNQVFAKQ  660
KVVQPAIENV EEHHWLDATR LEDDSSMWMI KAKYQEDKIK FELSSSARKI DLENNIAQRF  720
NLSGGSFKIM YQDELNDWIL ITCDTDLSFC MKTLHKLGRT TIEVLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-36	Nin-like family protein