PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174269.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 369aa MW: 41233.4 Da PI: 6.1077

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	31.9	3.5e-10	80	117	2	39
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeeefakk 39 Fl k+y+i++++e++++isws++g+sf+v+d+++fa + XP_027174269.1 80 FLLKVYDIVKNPETDSIISWSSSGTSFIVWDPHRFAAE 117 9**********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MEANKETSEV TNSTKYELKN GENKGERLNP TIPIGTDVSE SSSNAIVTAT ATVSATPLAK 60 EGYANGASSS SSRVRAPPPF LLKVYDIVKN PETDSIISWS SSGTSFIVWD PHRFAAEGFR 120 KINWDRLEFQ NAWFQKGKKS WLKKIKRRIQ GTQNAHLCKP LGTEGQLSLS GEQKKFESLM 180 QGHDELKVEI MKLKDMEENS VKEMEILEKQ AQCITSKLQN MLKYMIHELL IRKKKLQSNN 240 AANEQGSGGR QSIESLVELL NEEETSHGSR KNSPRAQSGT GKIFSSVNLS TAVQEEEDCT 300 VSMGKFSDFY TTVYSLLEKQ LMDDISCENV PEEERAKLQQ NDVIPLEDLI EGPANWNEFA 360 KGIGNKARS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MEANKETSEV TNSTKYELKN GENKGERLNP TIPIGTDVSE SSSNAIVTAT ATVSATPLAK  60
EGYANGASSS SSRVRAPPPF LLKVYDIVKN PETDSIISWS SSGTSFIVWD PHRFAAEGFR  120
KINWDRLEFQ NAWFQKGKKS WLKKIKRRIQ GTQNAHLCKP LGTEGQLSLS GEQKKFESLM  180
QGHDELKVEI MKLKDMEENS VKEMEILEKQ AQCITSKLQN MLKYMIHELL IRKKKLQSNN  240
AANEQGSGGR QSIESLVELL NEEETSHGSR KNSPRAQSGT GKIFSSVNLS TAVQEEEDCT  300
VSMGKFSDFY TTVYSLLEKQ LMDDISCENV PEEERAKLQQ NDVIPLEDLI EGPANWNEFA  360
KGIGNKARS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	LKKIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-16	HSF family protein