PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027173959.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 324aa MW: 35981 Da PI: 5.3779 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l ++++++G+g +W + +r+ g++R++k+c++rw++yl XP_027173959.1 14 RGPWSPEEDAILRNYIEKYGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.3e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd +++ ++ G++ W+ Ia++++ gRt++++k++w++ XP_027173959.1 69 GGFTDEEDSIILTLHSNIGSR-WSVIASHLP-GRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence |
MGRAPCCDKT KVKRGPWSPE EDAILRNYIE KYGTGGNWIA LPRKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTDEEDSIIL TLHSNIGSRW SVIASHLPGR TDNDVKNHWN TKLKKKLSAV 120 NATNPTTVIP IVDSNSNNFT SNPSAFTLAT SFNKPQPDCY GNSTYPIVGS DAPVQYSSMD 180 HMVLGYSMTE VVPDLLYDSS STDQFSLPEL FEVQENSTLQ KNGFTTSSSQ EISSLSPSCS 240 LAKSYSSWND NLFGEEVGFF VELESRSSNY NLVQSAQQEE KVSNEAEGSC LPIYSYPTAS 300 FFDQMSDNIL PPQGHHQTAF PILD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-71 | MYB family protein |