PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173959.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 324aa    MW: 35981 Da    PI: 5.3779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l ++++++G+g +W + +r+ g++R++k+c++rw++yl
   XP_027173959.1 14 RGPWSPEEDAILRNYIEKYGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

2Myb_DNA-binding46.58.3e-1569111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd +++ ++   G++ W+ Ia++++ gRt++++k++w++
   XP_027173959.1  69 GGFTDEEDSIILTLHSNIGSR-WSVIASHLP-GRTDNDVKNHWNT 111
                      569******************.*********.***********97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MGRAPCCDKT KVKRGPWSPE EDAILRNYIE KYGTGGNWIA LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTDEEDSIIL TLHSNIGSRW SVIASHLPGR TDNDVKNHWN TKLKKKLSAV  120
NATNPTTVIP IVDSNSNNFT SNPSAFTLAT SFNKPQPDCY GNSTYPIVGS DAPVQYSSMD  180
HMVLGYSMTE VVPDLLYDSS STDQFSLPEL FEVQENSTLQ KNGFTTSSSQ EISSLSPSCS  240
LAKSYSSWND NLFGEEVGFF VELESRSSNY NLVQSAQQEE KVSNEAEGSC LPIYSYPTAS  300
FFDQMSDNIL PPQGHHQTAF PILD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-71MYB family protein