PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173516.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family TCP
Protein Properties Length: 148aa    MW: 16194.2 Da    PI: 8.5106
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP77.43.9e-2429100577
             TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 
                     k+ +s++h+ v g+dRR+ l++ ca r+F+L ++LG+ ++++t+eWLl qak+++++  +t+ s++++  +++
  XP_027173516.1  29 KKASSDRHSNVRGKDRRIVLPIGCADRVFELRKRLGHRTAGQTVEWLLIQAKASVDAVLNTNPSAPQNQ-NGD 100
                     7889*********************************************************33333122.111 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MVSSNTPSNV PKPSHSSKCV GPRMNNFCKK ASSDRHSNVR GKDRRIVLPI GCADRVFELR  60
KRLGHRTAGQ TVEWLLIQAK ASVDAVLNTN PSAPQNQNGD EMSGSISMSK PILTSASDVE  120
ISADEVARFL FGDHGGYALE EDQQKERE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.12e-18TCP family protein