PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027154324.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 496aa MW: 55406 Da PI: 6.0904

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027154324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.6e-14	38	82	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd++l + ++ +G+++W+ Ia+++ +t qc+ rw++yl XP_027154324.1 38 SWSQEEDDILREQIRIHGTENWAIIASKFK-DKTTRQCRRRWFTYL 82 6**************************9.***********97 PP
2	Myb_DNA-binding	44.8	2.8e-14	88	131	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd+ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + XP_027154324.1 88 KGGWSPEEDLLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 131 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MQSVKRRPSS NTGATDAIAT SQQQQQQQPK QKERHIVSWS QEEDDILREQ IRIHGTENWA 60 IIASKFKDKT TRQCRRRWFT YLNSDFKKGG WSPEEDLLLC EAQKIFGNRW TEIAKVVSGR 120 TDNAVKNRFS TLCKKRAKRE ALAKENNTSY INLNNKRVIF PSGLSTNGIS EAAGPLKKMR 180 RAHIPDPTES CNREEELVGE CATSSQLLRP PFAVLAQNIH KSGSNLSTQQ HGNDVKEAPT 240 DASNNKIQGT FLKKDDPKVL ALMQQAELLS SLAAKVNVDS TDQSLENAWK VLQDFLNQNK 300 ESDEFCFRIS DMDVQLDILK DLVEDLQGSF EGNQASWRQP DLYEESSGSS EYSTGSTLPS 360 HLPLDKVEQC QSELCAPYQD VRPVSQSTHA GDQHQLVKVE NTMLGSEPTD KDVMPDCDEL 420 KADGVLACGF STTEFGSPLQ ETPLFRTIAA TIPSPKFSES ERHFLLRALG MESTSLTPST 480 NPSQPPACKR ALLQSL

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MQSVKRRPSS NTGATDAIAT SQQQQQQQPK QKERHIVSWS QEEDDILREQ IRIHGTENWA  60
IIASKFKDKT TRQCRRRWFT YLNSDFKKGG WSPEEDLLLC EAQKIFGNRW TEIAKVVSGR  120
TDNAVKNRFS TLCKKRAKRE ALAKENNTSY INLNNKRVIF PSGLSTNGIS EAAGPLKKMR  180
RAHIPDPTES CNREEELVGE CATSSQLLRP PFAVLAQNIH KSGSNLSTQQ HGNDVKEAPT  240
DASNNKIQGT FLKKDDPKVL ALMQQAELLS SLAAKVNVDS TDQSLENAWK VLQDFLNQNK  300
ESDEFCFRIS DMDVQLDILK DLVEDLQGSF EGNQASWRQP DLYEESSGSS EYSTGSTLPS  360
HLPLDKVEQC QSELCAPYQD VRPVSQSTHA GDQHQLVKVE NTMLGSEPTD KDVMPDCDEL  420
KADGVLACGF STTEFGSPLQ ETPLFRTIAA TIPSPKFSES ERHFLLRALG MESTSLTPST  480
NPSQPPACKR ALLQSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	1e-159	MYB family protein