PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027153829.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 388aa MW: 43296.4 Da PI: 7.7612

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027153829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33	1e-10	83	104	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ rtG+Ck+G +CkF+H+ XP_027153829.1 83 DCPHYVRTGICKFGLTCKFNHP 104 5********************9 PP
2	zf-CCCH	29.8	9.9e-10	126	148	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++ G CkyG+ C+++H++ XP_027153829.1 126 ECKYYSTAGGCKYGEACRYSHSK 148 7********************95 PP
3	zf-CCCH	31.3	3.5e-10	170	193	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++++r+G C yG +C F+H++ XP_027153829.1 170 KECPYYMRNGSCGYGTQCVFHHPE 193 58********************96 PP
4	zf-CCCH	28	3.7e-09	295	321	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +f++tG Ck+ + C+F+H++ XP_027153829.1 295 PGQPECAYFMKTGDCKFKSACRFHHPK 321 5789*********************96 PP
5	zf-CCCH	27.1	7.2e-09	337	362	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++ +Cr++ r+G+Ck+G C F H+ XP_027153829.1 337 PGRNICRHYERFGICKFGRVCLFDHP 362 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MGTYEDDHVS INITTSQLKR QAQETELGFS SSGLNSQTER ALVAEFQNVG LNSFDNDNRG 60 GLNSAHNDSG GPQRLPLRPY AGDCPHYVRT GICKFGLTCK FNHPVKKTSL VVKDKDWSSD 120 NAGQIECKYY STAGGCKYGE ACRYSHSKKE SQVAAPKFNF LGLPMRLGGK ECPYYMRNGS 180 CGYGTQCVFH HPEPSSMGGL DLQKSSLNEA SQPNQVPWST RPLSSTLSYR NDYSSHTIAN 240 SVPQWMHGHS EFNECQAEEV PQQRSRNAHL VSGAARADML EQDIPVQVEE FPERPGQPEC 300 AYFMKTGDCK FKSACRFHHP KGQPTCILSE KGLPLRPGRN ICRHYERFGI CKFGRVCLFD 360 HPVHPNLSTF KDWPSSEPSG YDAGSWMQ

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MGTYEDDHVS INITTSQLKR QAQETELGFS SSGLNSQTER ALVAEFQNVG LNSFDNDNRG  60
GLNSAHNDSG GPQRLPLRPY AGDCPHYVRT GICKFGLTCK FNHPVKKTSL VVKDKDWSSD  120
NAGQIECKYY STAGGCKYGE ACRYSHSKKE SQVAAPKFNF LGLPMRLGGK ECPYYMRNGS  180
CGYGTQCVFH HPEPSSMGGL DLQKSSLNEA SQPNQVPWST RPLSSTLSYR NDYSSHTIAN  240
SVPQWMHGHS EFNECQAEEV PQQRSRNAHL VSGAARADML EQDIPVQVEE FPERPGQPEC  300
AYFMKTGDCK FKSACRFHHP KGQPTCILSE KGLPLRPGRN ICRHYERFGI CKFGRVCLFD  360
HPVHPNLSTF KDWPSSEPSG YDAGSWMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	7e-85	C3H family protein