PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027127532.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 255aa    MW: 28501.2 Da    PI: 8.0792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027127532.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-1361107354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riN  +  Lr+l+P        K++Ka+ L ++++++k+L
  XP_027127532.1  61 RNHSEAERRRRERINGHLTSLRSLIPGT-----SKMDKAALLAEVINHVKEL 107
                     58*************************7.....6****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MEFLNSFNGF PENYGYQGTV KNGSGSSSSL ILDNEKGELV RALVRPGQKG VNAEKALIAL  60
RNHSEAERRR RERINGHLTS LRSLIPGTSK MDKAALLAEV INHVKELRKK ATEATKGMLV  120
PTDTDEVRVE EHQADAAGEV SYTIRAFLCC DYKHELFSDL RQALETLPLK TVSAEIATLG  180
SRMVNVFEMT GCDQQNLENS EGRELLVNSV RQALRSVLDK FYASEEFLSR NALSNKRRRV  240
SLFNASSSSS LENFW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772ERRRRE
2236240KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-36bHLH family protein