PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027127509.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 1082aa MW: 118172 Da PI: 6.1182

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027127509.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.4e-18	77	124	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+++v+++G g+W tI ++ g+gRt k+c++rw ++l XP_027127509.1 77 KGPWSAEEDERLKKCVEEHGIGNWITIEKYSGLGRTSKSCRLRWTNHL 124 79*******************************************996 PP
2	Myb_DNA-binding	47.2	5.3e-15	130	172	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g++T++E+ l v+++k++G++ W+ I+++++ gRt++++k++w+ XP_027127509.1 130 KGSFTKQEERLVVKLHKKYGNK-WSYISSKLP-GRTDNEIKNFWH 172 799*****************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1082 aa Download sequence
MTQNGVEGCL LGSTSCNLVW WLPEVSSGGP FDGGKSKLKD QPCMLEEGDD LDIQGPLENE 60 GGRAAAGDEG DVMVVKKGPW SAEEDERLKK CVEEHGIGNW ITIEKYSGLG RTSKSCRLRW 120 TNHLRPNLKK GSFTKQEERL VVKLHKKYGN KWSYISSKLP GRTDNEIKNF WHGRVRRCRR 180 KFLPIYPEDI EDGGSRGDGL DTDGKNNIND NDHNSSAKNG TNSIPSFPSI TLPEFQPPLS 240 LSVPFQQQPS PVINQNPASF FTPLPRTRLL SPQEKPLPSP HGFLSSHYPS PACYPTHIPQ 300 SPLSTPSQTQ YHSIQRSQST ETPDTTLQNP LLSLPPDCSS IHQSNSPTGP AFTPLKPPPV 360 LSPYVGYLKG SRGSSSLQSS PTAVTQSSAP AQGSSISAKG SSAPSPKIDV SSSVTSSQFS 420 STATGSLINS PKLHLSVQLP TASSVPLQTS SLPSALSSSN LNSPKIHDPM IASPHSPLRL 480 NLTSSIPLDS HLQHNRCASP FLLSSQSWNA SKAEPPSVQT PTSALRPTPE MKDSERSVAV 540 LDAPLQEAQA KTDTLHKNSP EELSVDGYLI NNDLQGKILV TESIRDNVFY QSSSERDFSC 600 EKPRTINLLG QSLKQENTTR ETPKTEDLIN KRSCKKVSHD KCLKPGILMG KISRRQGLLS 660 EISKTGVLLV ESEKKQILLQ ELMNNNLTQD VLARQSSKTV DLQLGRLTKT TKLFGERVSI 720 EDPLSQISAR KSSVGQKSEE GVSTFENLTS LRNQNLVEDI LDISPTRSTS NRDTFGFSYS 780 PKDTTTQFIS DDLQWNLSSG QVVAGEVCNE ILRGGAPLAS QLQEHQIETF GPVFSHRPEL 840 VLSNFGYDGG GKSTCGEFYE GDHLDKSSRE KCPDSPKGEF IEDQSQGGQV VSGGFMTEGL 900 LVSQNWHEIL RGSISDLDQY ITANLLRSPT PDGKLNTPQE CGGGIMEDPL SIEGSSSRSL 960 KNGVSLDQSS RDIFLGESSS ANVIGLHEVA LTEFVSPTRQ TTVAHLLTSR DQFSEAGSSQ 1020 CYEGVKLKQE IEEPHPLPEE LSSLLEFSPT TLPDWHDIGC ETSSIMDITF GLEMYHLHPI 1080 MR

Sequence ? help Back to Top

Protein Sequence Length: 1082 aa Download sequence

MTQNGVEGCL LGSTSCNLVW WLPEVSSGGP FDGGKSKLKD QPCMLEEGDD LDIQGPLENE  60
GGRAAAGDEG DVMVVKKGPW SAEEDERLKK CVEEHGIGNW ITIEKYSGLG RTSKSCRLRW  120
TNHLRPNLKK GSFTKQEERL VVKLHKKYGN KWSYISSKLP GRTDNEIKNF WHGRVRRCRR  180
KFLPIYPEDI EDGGSRGDGL DTDGKNNIND NDHNSSAKNG TNSIPSFPSI TLPEFQPPLS  240
LSVPFQQQPS PVINQNPASF FTPLPRTRLL SPQEKPLPSP HGFLSSHYPS PACYPTHIPQ  300
SPLSTPSQTQ YHSIQRSQST ETPDTTLQNP LLSLPPDCSS IHQSNSPTGP AFTPLKPPPV  360
LSPYVGYLKG SRGSSSLQSS PTAVTQSSAP AQGSSISAKG SSAPSPKIDV SSSVTSSQFS  420
STATGSLINS PKLHLSVQLP TASSVPLQTS SLPSALSSSN LNSPKIHDPM IASPHSPLRL  480
NLTSSIPLDS HLQHNRCASP FLLSSQSWNA SKAEPPSVQT PTSALRPTPE MKDSERSVAV  540
LDAPLQEAQA KTDTLHKNSP EELSVDGYLI NNDLQGKILV TESIRDNVFY QSSSERDFSC  600
EKPRTINLLG QSLKQENTTR ETPKTEDLIN KRSCKKVSHD KCLKPGILMG KISRRQGLLS  660
EISKTGVLLV ESEKKQILLQ ELMNNNLTQD VLARQSSKTV DLQLGRLTKT TKLFGERVSI  720
EDPLSQISAR KSSVGQKSEE GVSTFENLTS LRNQNLVEDI LDISPTRSTS NRDTFGFSYS  780
PKDTTTQFIS DDLQWNLSSG QVVAGEVCNE ILRGGAPLAS QLQEHQIETF GPVFSHRPEL  840
VLSNFGYDGG GKSTCGEFYE GDHLDKSSRE KCPDSPKGEF IEDQSQGGQV VSGGFMTEGL  900
LVSQNWHEIL RGSISDLDQY ITANLLRSPT PDGKLNTPQE CGGGIMEDPL SIEGSSSRSL  960
KNGVSLDQSS RDIFLGESSS ANVIGLHEVA LTEFVSPTRQ TTVAHLLTSR DQFSEAGSSQ  1020
CYEGVKLKQE IEEPHPLPEE LSSLLEFSPT TLPDWHDIGC ETSSIMDITF GLEMYHLHPI  1080
MR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26930.1	4e-46	MYB family protein