PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027127049.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 199aa    MW: 21931.5 Da    PI: 6.9017
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027127049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.52.8e-44171161100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++Cv+apyfpa++p+kfa vh++FGasnv k+l++lpe++r da+s++vyeA+ar+rdPvyG+v+ i++lq+q++ l+++la
  XP_027127049.1  17 PCAACKLLRRRCSQECVFAPYFPADEPHKFASVHRVFGASNVNKMLQELPEHQRGDAVSAMVYEANARMRDPVYGCVSAISSLQNQVDLLQSQLA 111
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l++++
  XP_027127049.1 112 LAQAQ 116
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MKESGRKQVG VVAGGSPCAA CKLLRRRCSQ ECVFAPYFPA DEPHKFASVH RVFGASNVNK  60
MLQELPEHQR GDAVSAMVYE ANARMRDPVY GCVSAISSLQ NQVDLLQSQL ALAQAQVLQM  120
RISSSSSSSL IPMSQDQYYN STTVPTDHNS APPDHHHQNH SPTASRDHRH LEPISSHFNA  180
DTPPMMLDEG NIGDSLWSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.17e-59LBD family protein