PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027126918.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GATA | ||||||||
Protein Properties | Length: 371aa MW: 40453.3 Da PI: 6.5048 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.3 | 1.8e-17 | 258 | 292 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l XP_027126918.1 258 CLHCGSEKTPQWRTGPMGPKTLCNACGVRYKSGRL 292 99*****************************9885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence |
MEASSEFFVG GYFSHAGDNE FGHKSMENQN ITTGNSNNFT VDDLLDFPKE DEVMTDAFFD 60 SITGNSGESS SLTVVDSCNS SVSGGDRQFN GNISCRSFTD TQFSGSELCV PYDDLAELEW 120 LSNFVEESFS SDDLHNLHLI SPTTNFKAPS ASSAATANAT TDTSSSAATI STNNDNSNSS 180 SPVFPSDVSF PGKARSKRSR AAPCNWASRL LLLASPATSS SEPTNDVNTP NPMSVTIKAP 240 KQAPSRKRET TETPGRQCLH CGSEKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA 300 SPTFVSAKHS NSHRKVLELR RQKELQRQQQ QQLLSQASIF GVSNGGDEYL IRHHHHHPHQ 360 QNVGPDHRLM I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 7e-65 | GATA family protein |