PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126856.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 363aa MW: 39849.9 Da PI: 5.9939

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.8	2.6e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+++ +G g+W+t++r+ g+ R++k+c++rw +yl XP_027126856.1 14 RGLWSPEEDEKLVNYISTYGHGCWSTVPRRAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.5	2.1e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l++++++ lG++ W+ Ia++++ gRt++++k++w+ XP_027126856.1 67 RGSFSPQEASLIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSTV PRRAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEASLIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLVSHH 120 GLPDLCNFPP NLSSAFAPGA SVESFFSVNA NPNLIPGAHF DNLYIPTMAS TLQGFDHNIH 180 NDIIGVDEMN NFPNLVPVPT VTTPMIDSPI CSCDPVWPAG NLQSDNHHLD PALASAALFN 240 ASNVQLIHPK MIIQSYNDVD DVLMADGTPK ICEILEEGDQ YSLPSLSADT ISQEVDPIAA 300 SLSSFLPSAS DPCAQIEPGN RQLLESIESL VSMMPPSSSS SSSSSLSLSQ CLQYYHAANA 360 YEP

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSTV PRRAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEASLIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLVSHH  120
GLPDLCNFPP NLSSAFAPGA SVESFFSVNA NPNLIPGAHF DNLYIPTMAS TLQGFDHNIH  180
NDIIGVDEMN NFPNLVPVPT VTTPMIDSPI CSCDPVWPAG NLQSDNHHLD PALASAALFN  240
ASNVQLIHPK MIIQSYNDVD DVLMADGTPK ICEILEEGDQ YSLPSLSADT ISQEVDPIAA  300
SLSSFLPSAS DPCAQIEPGN RQLLESIESL VSMMPPSSSS SSSSSLSLSQ CLQYYHAANA  360
YEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	6e-79	MYB family protein