PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126566.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 301aa    MW: 32287.7 Da    PI: 7.0078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000532072303255
                     ..TTS-STCHHHHHHHHHHHHHHH CS
             HLH  32 kapskKlsKaeiLekAveYIksLq 55 
                     ++p+ K + a++L +A+ YI+ Lq
  XP_027126566.1 207 AQPALKTDTASVLSEAIGYIRFLQ 230
                     68999******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MMAGNPNWWS MNSMHPQSHQ HQQFPSTTTF HSPAPPPPPP PPLPPQYNLY GGSSSPLSAN  60
SLSDHHPNPD FPRSWRQLLL GGLANEQERF VGSPFQNKKL ENWEGQTLNP SLRVPVSDVK  120
QEVALSTSVL FGAAADEEFQ ASTRPSWSQV VQASSPTSCV TSLSSNLLNF SSSKTEGRNQ  180
NPENSSECNS SIAGGVSKKP RIQHSTAQPA LKTDTASVLS EAIGYIRFLQ AQIEALSSPY  240
LGNASGVSGS MGQGHQQQSV VQDRPKDLKS RGLCLVPISC TQHVGSDNGA DYWAPALGGG  300
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-33bHLH family protein