PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126500.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 284aa MW: 32075 Da PI: 7.2218

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.2	4.6e-23	40	135	1	86
trihelix 1 rWtkqevlaLiearr..emeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rWtkqe+l Lie+++ e r+++g+ + +p+W++vs+++r +g++r+p+qC+++w+nl ++kki+++e++ ++e +s + + XP_027126500.1 40 RWTKQETLILIEGKNiaE---RVKEGRaadpalifvtgQHEPKWDSVSSYCRLHGVNRGPVQCRKRWSNLVSDFKKIRTWESQVKEEGESFWMMR 131 8**********97442...33333333456777777********************************************99999999999 PP trihelix 83 dqle 86 ++l+ XP_027126500.1 132 NDLR 135 9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MAPGPNDRLE KATSSASVLD EEHQAVERTN SENKSTRHPR WTKQETLILI EGKNIAERVK 60 EGRAADPALI FVTGQHEPKW DSVSSYCRLH GVNRGPVQCR KRWSNLVSDF KKIRTWESQV 120 KEEGESFWMM RNDLRREKNF QVTLIEKSAV LNGNSYQAVM GMSVDGREAD GTCVADTEDE 180 DEEDVNRGIE TGVVFDSGTH ARPETLISHL EKCAQGKIFR GPNVQVARES PRSNSPAPMP 240 LSGLIHAQVS FHPRLQQATN LVDCSKLPPT SFYLLFYTFK RYTV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-48	Trihelix family protein