PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126473.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

E2F/DP

Protein Properties

Length: 406aa MW: 44820.6 Da PI: 9.0984

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	72.5	4.6e-23	39	104	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ ++ +++ l+++a +L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_027126473.1 39 RKQKSLGLLCSNFLRLYDREGVETIGLDDAAARL---GV--ERRRIYDIVNVLESVGVLARKAKNRYTWKG 104 79***************999********.....****************************98 PP
2	E2F_TDP	72.6	4.3e-23	175	255	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL lltq+f+kl+ + + ++++l+++ak L+++ ++ k+RR+YDi+NVL +++ iek ++k+++rw g XP_027126473.1 175 RKEKSLALLTQNFVKLFLCMDMDMISLDDAAKILLKNgkdpaMTRSKVRRLYDIANVLASMKFIEKthhpeTRKPAFRWLG 255 79*******************************9998899*****************99999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MGMELLPSAN QAYEAAAAAA AGGSGGGGGG GGSQHIYCRK QKSLGLLCSN FLRLYDREGV 60 ETIGLDDAAA RLGVERRRIY DIVNVLESVG VLARKAKNRY TWKGFGAIPS ALQLLKEQGM 120 VTNENANDGT SSVKTSDDEE DDTYSNLSNY SSQNHNFNPI SAPKLPQSSK YADNRKEKSL 180 ALLTQNFVKL FLCMDMDMIS LDDAAKILLK NGKDPAMTRS KVRRLYDIAN VLASMKFIEK 240 THHPETRKPA FRWLGMKGIS ESGADPSAID GSKKRAFGMD LTNMTVKRSK VEPVGDGGLQ 300 QGMKVQLKAQ VKREALEDEV LRPKLQIDSR ASTRSYRFGP FAPVNAPQVA ASEDNKETQS 360 HDWESLAATY RPQYHNQALR DLFAHYVEAW KSWYTEVAEN PIQLIS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MGMELLPSAN QAYEAAAAAA AGGSGGGGGG GGSQHIYCRK QKSLGLLCSN FLRLYDREGV  60
ETIGLDDAAA RLGVERRRIY DIVNVLESVG VLARKAKNRY TWKGFGAIPS ALQLLKEQGM  120
VTNENANDGT SSVKTSDDEE DDTYSNLSNY SSQNHNFNPI SAPKLPQSSK YADNRKEKSL  180
ALLTQNFVKL FLCMDMDMIS LDDAAKILLK NGKDPAMTRS KVRRLYDIAN VLASMKFIEK  240
THHPETRKPA FRWLGMKGIS ESGADPSAID GSKKRAFGMD LTNMTVKRSK VEPVGDGGLQ  300
QGMKVQLKAQ VKREALEDEV LRPKLQIDSR ASTRSYRFGP FAPVNAPQVA ASEDNKETQS  360
HDWESLAATY RPQYHNQALR DLFAHYVEAW KSWYTEVAEN PIQLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-114	E2F/DP family protein