PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027126371.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family WOX
Protein Properties Length: 260aa    MW: 29451 Da    PI: 8.6575
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027126371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.6e-211978357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++tkeq++ Le+l+++  r+psae++++++++l    +++ ++V++WFqN++a++++
  XP_027126371.1 19 SRWNPTKEQIDMLESLYKQgLRTPSAEQIQQITNRLraygHIEGKNVFYWFQNHKARQRQ 78
                    6*****************99**************************************97 PP
2Wus_type_Homeobox115.62.4e-371880365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +RW+Pt+eQi +Le+lyk+GlrtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqkq
     XP_027126371.1 18 GSRWNPTKEQIDMLESLYKQGLRTPSAEQIQQITNRLRAYGHIEGKNVFYWFQNHKARQRQKQ 80
                       58***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MESHDNLDMP ISGGAPVGSR WNPTKEQIDM LESLYKQGLR TPSAEQIQQI TNRLRAYGHI  60
EGKNVFYWFQ NHKARQRQKQ KQDHVSPFNR FLHKTASVLP PCTNVLCSPY YMPYPETGLC  120
HQQQQLSKVL LPRSFKRRPI LPEKLEKSKL LGRALHDQAN QESNDMMHSF RANGECVMSN  180
SKQFNQETLD LFPQQPTGTL QSRTAAAVAS CSFPSNYFGY STATPSTSSA TRSFTDKGGY  240
DDHHPFFDFL CGNNGSCDGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.16e-52WOX family protein