PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027126340.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 356aa MW: 40960.9 Da PI: 4.3956

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027126340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.9	1.7e-15	122	206	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ L++a ++ + +r++l+ W+ev++k+ ++ ++ r+ +qC+++++ l+k+ykk+k+ ++ t + +s+++yf++++ XP_027126340.1 122 WSEHETFILLDAWGDKFLQHGRKSLRSEEWQEVAEKVsQQSKIDRTDTQCRNRLDTLKKKYKKEKAKLGE-TVNFVSKWVYFQKMD 206 ***********************************778899**********************9.578888******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MSQGYGSSNR QKLPVRNAGQ NVINRYVEDD DVDDEEEEVE DEEEDDDNEE NGVQRVERDE 60 FDDDNEDDDD DDYGDMQRHP KKRKLKSLLS SYEFAPRVPA TSAAPVPVPK PSFGGRNAVA 120 DWSEHETFIL LDAWGDKFLQ HGRKSLRSEE WQEVAEKVSQ QSKIDRTDTQ CRNRLDTLKK 180 KYKKEKAKLG ETVNFVSKWV YFQKMDMLLS SPPQQAGLSC GVDSGEYVFM NPGEYLNRSN 240 GLDEMRDSPG ISESAEAEED DSEGLPPKRT KTVRDRGNGA SFKLLADSIE KFSEIYEKIE 300 NSKRQQILEL EKMRMDFHRE LELQKRQILE RAQAEIAKIR QGDDEDNDVS AENISR

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MSQGYGSSNR QKLPVRNAGQ NVINRYVEDD DVDDEEEEVE DEEEDDDNEE NGVQRVERDE  60
FDDDNEDDDD DDYGDMQRHP KKRKLKSLLS SYEFAPRVPA TSAAPVPVPK PSFGGRNAVA  120
DWSEHETFIL LDAWGDKFLQ HGRKSLRSEE WQEVAEKVSQ QSKIDRTDTQ CRNRLDTLKK  180
KYKKEKAKLG ETVNFVSKWV YFQKMDMLLS SPPQQAGLSC GVDSGEYVFM NPGEYLNRSN  240
GLDEMRDSPG ISESAEAEED DSEGLPPKRT KTVRDRGNGA SFKLLADSIE KFSEIYEKIE  300
NSKRQQILEL EKMRMDFHRE LELQKRQILE RAQAEIAKIR QGDDEDNDVS AENISR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-71	Trihelix family protein